PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_19593.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Dof

Protein Properties

Length: 399aa MW: 42948.4 Da PI: 8.2454

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_19593.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.9	2.2e-38	27	87	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fC++C+ryWt+GG++rn+PvG+grrk+k+ss MLOC_19593.2 27 PDKILPCPRCNSMDTKFCYYNNYNIHQPRHFCRGCQRYWTAGGSMRNLPVGAGRRKSKSSS 87 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-30	24	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-31	29	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.127	31	85	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	33	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MTEPESRLEA AKTEGDGSSK EKVLKKPDKI LPCPRCNSMD TKFCYYNNYN IHQPRHFCRG 60 CQRYWTAGGS MRNLPVGAGR RKSKSSSTNC HGIFIPGSSL APPGIPLPIK ENQPAVKFGS 120 DSTLSNSMAS LLRVEEQNKN SNLASTAHPR NGENQTCPPS ATTSDNPRTE SVKVTAGVQQ 180 NGIAGDCNGV TPMPPIPCFP GPPFVYPWNP AWNGVPAMAA QVCPVPAEPA NCSENGNGGT 240 IQWNFPPMVP MPGFCGPPIP FPLMPPSVWP LVSPWPNGAW SAPWLGPSYN MSAAPPTSTS 300 TCSDSGSPVL GKHPRDSDPQ GGEKAEKSLW IPKTLRIDDP DEAAKSSIWT TLGIEPGERG 360 MFRPFQQKSG GREQMSNAAR VMQANPAAQS RFESFQETT

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MTEPESRLEA AKTEGDGSSK EKVLKKPDKI LPCPRCNSMD TKFCYYNNYN IHQPRHFCRG  60
CQRYWTAGGS MRNLPVGAGR RKSKSSSTNC HGIFIPGSSL APPGIPLPIK ENQPAVKFGS  120
DSTLSNSMAS LLRVEEQNKN SNLASTAHPR NGENQTCPPS ATTSDNPRTE SVKVTAGVQQ  180
NGIAGDCNGV TPMPPIPCFP GPPFVYPWNP AWNGVPAMAA QVCPVPAEPA NCSENGNGGT  240
IQWNFPPMVP MPGFCGPPIP FPLMPPSVWP LVSPWPNGAW SAPWLGPSYN MSAAPPTSTS  300
TCSDSGSPVL GKHPRDSDPQ GGEKAEKSLW IPKTLRIDDP DEAAKSSIWT TLGIEPGERG  360
MFRPFQQKSG GREQMSNAAR VMQANPAAQS RFESFQETT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_19593.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK358805	0.0	AK358805.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1083I10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181996.1	0.0	cyclic dof factor 1-like isoform X1
Refseq	XP_020182001.1	0.0	cyclic dof factor 2-like isoform X2
TrEMBL	A0A287H7G7	0.0	A0A287H7G7_HORVV; Uncharacterized protein
STRING	MLOC_19593.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-42	cycling DOF factor 2