PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_19593.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Dof | ||||||||
Protein Properties | Length: 399aa MW: 42948.4 Da PI: 8.2454 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.9 | 2.2e-38 | 27 | 87 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fC++C+ryWt+GG++rn+PvG+grrk+k+ss MLOC_19593.1 27 PDKILPCPRCNSMDTKFCYYNNYNIHQPRHFCRGCQRYWTAGGSMRNLPVGAGRRKSKSSS 87 7899******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-30 | 24 | 84 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-31 | 29 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.127 | 31 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 33 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MTEPESRLEA AKTEGDGSSK EKVLKKPDKI LPCPRCNSMD TKFCYYNNYN IHQPRHFCRG 60 CQRYWTAGGS MRNLPVGAGR RKSKSSSTNC HGIFIPGSSL APPGIPLPIK ENQPAVKFGS 120 DSTLSNSMAS LLRVEEQNKN SNLASTAHPR NGENQTCPPS ATTSDNPRTE SVKVTAGVQQ 180 NGIAGDCNGV TPMPPIPCFP GPPFVYPWNP AWNGVPAMAA QVCPVPAEPA NCSENGNGGT 240 IQWNFPPMVP MPGFCGPPIP FPLMPPSVWP LVSPWPNGAW SAPWLGPSYN MSAAPPTSTS 300 TCSDSGSPVL GKHPRDSDPQ GGEKAEKSLW IPKTLRIDDP DEAAKSSIWT TLGIEPGERG 360 MFRPFQQKSG GREQMSNAAR VMQANPAAQS RFESFQETT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_19593.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358805 | 0.0 | AK358805.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1083I10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181996.1 | 0.0 | cyclic dof factor 1-like isoform X1 | ||||
Refseq | XP_020182001.1 | 0.0 | cyclic dof factor 2-like isoform X2 | ||||
TrEMBL | A0A287H7G7 | 0.0 | A0A287H7G7_HORVV; Uncharacterized protein | ||||
STRING | MLOC_19593.3 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 5e-42 | cycling DOF factor 2 |