PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_19175.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 225aa MW: 24027.3 Da PI: 6.2606 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 36.8 | 1.2e-11 | 1 | 28 | 102 | 129 |
NAM 102 lkktLvfykgrapkgektdWvmheyrle 129 ++ktLvfy+grap+g+k+dW+mheyrle MLOC_19175.2 1 MRKTLVFYRGRAPHGQKSDWIMHEYRLE 28 89************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02365 | 3.0E-4 | 1 | 27 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.099 | 1 | 50 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-15 | 1 | 50 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MRKTLVFYRG RAPHGQKSDW IMHEYRLEEI DEAQGGTSED GWVVCRVFKK KCFFKIAGGG 60 EGSSSQSADA GAGHMAVSSP LGGHDHADRA AMASHYMHGM HPQYHPQHAS SFYYSQMQPP 120 EAAYSHHVQV QDLLTNHRPA ADAAGGGYDF SGLPVEHPGL DVGSSDGVAA DGLAEGRGQT 180 NGAADQQWQA MDGFSNGGSA AAVQQMSAMN SGQRGGEMDL WGYGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-14 | 1 | 51 | 116 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-14 | 1 | 51 | 116 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-14 | 1 | 51 | 116 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-14 | 1 | 51 | 116 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-14 | 1 | 51 | 119 | 169 | NAC domain-containing protein 19 |
3swm_B | 4e-14 | 1 | 51 | 119 | 169 | NAC domain-containing protein 19 |
3swm_C | 4e-14 | 1 | 51 | 119 | 169 | NAC domain-containing protein 19 |
3swm_D | 4e-14 | 1 | 51 | 119 | 169 | NAC domain-containing protein 19 |
3swp_A | 4e-14 | 1 | 51 | 119 | 169 | NAC domain-containing protein 19 |
3swp_B | 4e-14 | 1 | 51 | 119 | 169 | NAC domain-containing protein 19 |
3swp_C | 4e-14 | 1 | 51 | 119 | 169 | NAC domain-containing protein 19 |
3swp_D | 4e-14 | 1 | 51 | 119 | 169 | NAC domain-containing protein 19 |
4dul_A | 4e-14 | 1 | 51 | 116 | 166 | NAC domain-containing protein 19 |
4dul_B | 4e-14 | 1 | 51 | 116 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00431 | DAP | Transfer from AT4G10350 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_19175.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971542 | 1e-56 | EU971542.1 Zea mays clone 366845 NAC domain-containing protein 76 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155185.1 | 1e-162 | protein BEARSKIN1 | ||||
TrEMBL | M0V6B8 | 1e-163 | M0V6B8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_19175.1 | 1e-164 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 2e-23 | NAC domain containing protein 70 |