PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_19109.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Trihelix

Protein Properties

Length: 296aa MW: 32771.4 Da PI: 5.9497

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_19109.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.6	1.9e-19	44	122	2	79
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstc 79 Wt e+++Liea+++++e+ + l ++W++v +++++ g++rs++qC+++w+nl ++ykk+++ e ++ +e+ s + MLOC_19109.1 44 WTLPETMLLIEAKKRVHEDRHPADLGLARWRWVEDYCWRAGCQRSQNQCNDRWDNLMRDYKKVRAYEHTGAgPEAPSYW 122 *****************************************************************99988424444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.956	36	100	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.1E-6	38	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.18E-7	39	102	IPR009057	Homeodomain-like
Pfam	PF13837	3.7E-14	42	125	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MDTKGSGFQG GGEEETGSIM PSNANANANA GAMTVAREYR RGNWTLPETM LLIEAKKRVH 60 EDRHPADLGL ARWRWVEDYC WRAGCQRSQN QCNDRWDNLM RDYKKVRAYE HTGAGPEAPS 120 YWAMARAERK ARYLPSNLLR EIYEAMGEIV ERRMGIYGAG GTFLGAPPPP TVGTGLVSVP 180 MQASPLAQVL PRPLDQETRC SSESPERKRL RPSLDGQPGS STPASAAGNN DRHHQAPESD 240 DRESSDDIEE HDELSGAIGQ CAAILSGALE SREAAEERRH REVMAVEERR SVARQA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_19109.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU962106	2e-93	EU962106.1 Zea mays clone 240234 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020200121.1	1e-159	trihelix transcription factor ASR3-like
TrEMBL	A0A287MXY2	0.0	A0A287MXY2_HORVV; Uncharacterized protein
STRING	MLOC_19109.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3294	35	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	2e-44	Trihelix family protein