PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_19108.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 369aa    MW: 39269.3 Da    PI: 6.7775
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_19108.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.94.7e-07159180223
                   EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    C++Cgk F+r  nL+ H+r H
  MLOC_19108.1 159 FCNICGKGFRRDANLRMHMRAH 180
                   6*******************99 PP
2zf-C2H212.50.00045244268123
                   EEETTTT..EEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                   y C+ Cg  k+F    +L++H+r +
  MLOC_19108.1 244 YACERCGgkKRFAVLADLRSHLRHC 268
                   89********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.24E-6155180No hitNo description
SMARTSM003550.0018158180IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.635158180IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-6160180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
SMARTSM0035579206239IPR015880Zinc finger, C2H2-like
SMARTSM0035517244267IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDSTTNQFAG AAAGALSTKT APLPAMLADA FIGAGAGGGD GDPNAALQRL AALGDRMAAV  60
RRLLFASISG ESQPLSSSDI QSVSSEISSA AHLVVLNAAS LLSSSLPFPV PSAPPAPPAP  120
IQELPAAAST TDVLPQEATK GYDVVELDAD ELLAEHVHFC NICGKGFRRD ANLRMHMRAH  180
GDRFKTLDAL SRPGQAKPAD GRDVRFSCPF TGCNRNRAHR RFRPLKSAVC ARNHFRRSHC  240
PKLYACERCG GKKRFAVLAD LRSHLRHCGE EAQWRCSCGT TFSRKDKLFG HLALFEGHMP  300
AMSPLNKDAV TGTTEAPLDI MDEGGIEDGE DGGEGGFDPE FFKEWMEELK DDGVPAGGTI  360
WSGRAAAGQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_19108.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175848.10.0zinc finger protein STAR3-like
RefseqXP_020175849.10.0zinc finger protein STAR3-like
TrEMBLA0A3B6QHA40.0A0A3B6QHA4_WHEAT; Uncharacterized protein
TrEMBLA0A453NW930.0A0A453NW93_AEGTS; Uncharacterized protein
STRINGMLOC_19108.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.33e-69C2H2 family protein