PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_19031.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | WRKY | ||||||||
Protein Properties | Length: 229aa MW: 25026.8 Da PI: 7.0385 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.3 | 2.8e-32 | 169 | 224 | 3 | 58 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 Dgy+WrKYGqK +k++++prsYY+Ctsa+C++kk+ve+s++dp+++++tYeg+H h MLOC_19031.2 169 DGYRWRKYGQKFIKNNPHPRSYYKCTSARCSAKKHVEKSTDDPEMLIVTYEGSHLH 224 9*****************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.0E-31 | 164 | 225 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.2E-26 | 166 | 226 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-36 | 167 | 226 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.4E-27 | 169 | 224 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.013 | 169 | 227 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MANQSLHKCG LLVQEQEMGD ALRDHDLAAT ADDEDAGVWP GELDEQLIRE LLSDDSLLGS 60 MYPDNDSGRH RSCDTGGAPA ATPCNSGGST AAEHEPVPPA SASSMPLCSA YSGPTIRDIE 120 KALWSRPYTS SQRYGSLHFR RYGAPGTAPE SRHVTKVRSC GGGKKTPMDG YRWRKYGQKF 180 IKNNPHPRSY YKCTSARCSA KKHVEKSTDD PEMLIVTYEG SHLHGPQTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-22 | 169 | 224 | 19 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 9e-22 | 169 | 224 | 19 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_19031.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362686 | 0.0 | AK362686.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009G15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148290.1 | 1e-137 | WRKY transcription factor WRKY24-like isoform X1 | ||||
TrEMBL | F2DFL9 | 1e-155 | F2DFL9_HORVV; Predicted protein | ||||
STRING | MLOC_19031.2 | 1e-171 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13144 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 6e-25 | WRKY DNA-binding protein 49 |