PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_19022.8
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family BES1
Protein Properties Length: 585aa    MW: 65656.1 Da    PI: 5.0622
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_19022.8genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822105.41e-32111629134
        DUF822  29 iyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslq.sslkssalaspvesysaspksssfpsp 122
                   ++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+  + +p+    a+  g+++ +s e+++  +sl+s+a+ +p++s+++ +++++++sp
  MLOC_19022.8   1 MLAGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFLSSPQPPlpPPAQFQGAFQATSLETPVFtNSLNSYAVGTPLDSQASALQTDDSLSP 97 
                   79********************************************99999999***************99************************** PP

        DUF822 123 ssldsislasa.......a 134
                   sslds+ +a++        
  MLOC_19022.8  98 SSLDSVVVAEQciknesfG 116
                   ********98765544332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.9E-321126IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.801.2E-170145579IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514453.67E-163146579IPR017853Glycoside hydrolase superfamily
PfamPF013732.4E-80168540IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-52183197IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-52204222IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-52226247IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-52319341IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-52392411IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-52426442IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-52443454IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-52461484IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-52499521IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MLAGLRQHGN FPLPARADMN DVLAALARAA GWTVHPDGTT FLSSPQPPLP PPAQFQGAFQ  60
ATSLETPVFT NSLNSYAVGT PLDSQASALQ TDDSLSPSSL DSVVVAEQCI KNESFGNSSS  120
ANSLNCMGSD QLLRASAVWA GDYTKTPYIP LYASLSMGII NCYCQLVDPE AVRAELRHLK  180
SLNVDGVIVD CWWGIVEAWT PQKYEWSGYR DLFGIIKEFK LKVQVVLSFH GSGECGSGPV  240
LIALPRWVME IAQENQDIFF TDREGRRNTE CLSWGIDKER VLRGRTGIEV YFDFMRSFHM  300
EFRTLSEEGL ISAIEIGLGA SGELRYPSCS EKMGWRYPGI GEFQCYDRYM QKNLRQSALT  360
RGHLFWARGP DNAGYYNSRS HETGFFCDGG DYDSYYGRFF LNWYSGILID HVDQVLSLAT  420
LAFDGAAVVV KIPSIYWWYR TASHAAELTA GFYNPTNRDG YSPVFRMLKK HSIILKVVCY  480
GPEFTVQEND EALADPEGLT WQVMNAAWDH GLSVSVESAL PCLDVDMYSR ILDTAKPRND  540
PDRHHLSFFA YRQRTPFLLQ RDVCFSELET FVKCMHGEAI QNFVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12114857811444Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_19022.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN1793990.0FN179399.1 Hordeum vulgare subsp. vulgare partial mRNA for beta-amylase (BAM7 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149126.10.0beta-amylase 8-like isoform X1
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A287TEJ10.0A0A287TEJ1_HORVV; Beta-amylase
STRINGMLOC_19022.80.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]