PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_19022.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | BES1 | ||||||||
Protein Properties | Length: 299aa MW: 32766.2 Da PI: 4.8283 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 107.6 | 2.2e-33 | 1 | 115 | 29 | 134 |
DUF822 29 iyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspesslq.sslkssalaspvesysaspksssfpsps 123 ++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+ + +p+ +++ g+++ +s e+++ +sl+s+a+ +p++s+++ +++++++sps MLOC_19022.6 1 MLAGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFLSSPQPPlPPPAQFGAFQATSLETPVFtNSLNSYAVGTPLDSQASALQTDDSLSPS 97 79*********************************************999******************99*************************** PP DUF822 124 sldsislasa.......a 134 slds+ +a++ MLOC_19022.6 98 SLDSVVVAEQciknesfG 115 *******98866544432 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.6E-32 | 1 | 125 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene3D | G3DSA:3.20.20.80 | 1.2E-53 | 144 | 289 | IPR013781 | Glycoside hydrolase, catalytic domain |
SuperFamily | SSF51445 | 1.31E-48 | 145 | 291 | IPR017853 | Glycoside hydrolase superfamily |
Pfam | PF01373 | 8.7E-23 | 167 | 285 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.4E-11 | 182 | 196 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.4E-11 | 203 | 221 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.4E-11 | 225 | 246 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MLAGLRQHGN FPLPARADMN DVLAALARAA GWTVHPDGTT FLSSPQPPLP PPAQFGAFQA 60 TSLETPVFTN SLNSYAVGTP LDSQASALQT DDSLSPSSLD SVVVAEQCIK NESFGNSSSA 120 NSLNCMGSDQ LLRASAVWAG DYTKTPYIPL YASLSMGIIN CYCQLVDPEA VRAELRHLKS 180 LNVDGVIVDC WWGIVEAWTP QKYEWSGYRD LFGIIKEFKL KVQVVLSFHG SGECGSGPVL 240 IALPRWVMEI AQENQDIFFT DREGRRNTEC LSWGIDKERV LRGRTGIEVL GHPWFILIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wqu_A | 9e-40 | 147 | 289 | 12 | 154 | Beta-amylase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00543 | DAP | Transfer from AT5G45300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_19022.6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN179399 | 1e-171 | FN179399.1 Hordeum vulgare subsp. vulgare partial mRNA for beta-amylase (BAM7 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149126.1 | 0.0 | beta-amylase 8-like isoform X1 | ||||
Refseq | XP_020149127.1 | 0.0 | beta-amylase 8-like isoform X2 | ||||
Swissprot | Q9FH80 | 1e-106 | BAM8_ARATH; Beta-amylase 8 | ||||
TrEMBL | A0A446W364 | 0.0 | A0A446W364_TRITD; Beta-amylase | ||||
STRING | MLOC_19022.8 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45300.1 | 3e-94 | beta-amylase 2 |
Publications ? help Back to Top | |||
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