PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_19022.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | BES1 | ||||||||
Protein Properties | Length: 300aa MW: 32894.3 Da PI: 4.8283 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 107.3 | 2.7e-33 | 1 | 116 | 29 | 134 |
DUF822 29 iyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslq.sslkssalaspvesysaspksssfpsp 122 ++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+ + +p+ a+ g+++ +s e+++ +sl+s+a+ +p++s+++ +++++++sp MLOC_19022.4 1 MLAGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFLSSPQPPlpPPAQFQGAFQATSLETPVFtNSLNSYAVGTPLDSQASALQTDDSLSP 97 79********************************************99999999***************99************************** PP DUF822 123 ssldsislasa.......a 134 sslds+ +a++ MLOC_19022.4 98 SSLDSVVVAEQciknesfG 116 ********98866544432 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.9E-32 | 1 | 126 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene3D | G3DSA:3.20.20.80 | 1.2E-53 | 145 | 290 | IPR013781 | Glycoside hydrolase, catalytic domain |
SuperFamily | SSF51445 | 1.31E-48 | 146 | 292 | IPR017853 | Glycoside hydrolase superfamily |
Pfam | PF01373 | 8.8E-23 | 168 | 286 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.4E-11 | 183 | 197 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.4E-11 | 204 | 222 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.4E-11 | 226 | 247 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MLAGLRQHGN FPLPARADMN DVLAALARAA GWTVHPDGTT FLSSPQPPLP PPAQFQGAFQ 60 ATSLETPVFT NSLNSYAVGT PLDSQASALQ TDDSLSPSSL DSVVVAEQCI KNESFGNSSS 120 ANSLNCMGSD QLLRASAVWA GDYTKTPYIP LYASLSMGII NCYCQLVDPE AVRAELRHLK 180 SLNVDGVIVD CWWGIVEAWT PQKYEWSGYR DLFGIIKEFK LKVQVVLSFH GSGECGSGPV 240 LIALPRWVME IAQENQDIFF TDREGRRNTE CLSWGIDKER VLRGRTGIEV LGHPWFILIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1fa2_A | 1e-39 | 148 | 290 | 12 | 154 | BETA-AMYLASE |
5wqs_A | 1e-39 | 148 | 290 | 12 | 154 | Beta-amylase |
5wqu_A | 1e-39 | 148 | 290 | 12 | 154 | Beta-amylase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00543 | DAP | Transfer from AT5G45300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_19022.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149126.1 | 0.0 | beta-amylase 8-like isoform X1 | ||||
Swissprot | Q9FH80 | 1e-105 | BAM8_ARATH; Beta-amylase 8 | ||||
TrEMBL | A0A287TEJ1 | 0.0 | A0A287TEJ1_HORVV; Beta-amylase | ||||
TrEMBL | A0A287TEK1 | 0.0 | A0A287TEK1_HORVV; Beta-amylase | ||||
STRING | MLOC_19022.8 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45300.2 | 7e-96 | beta-amylase 2 |
Publications ? help Back to Top | |||
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