PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_19022.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family BES1
Protein Properties Length: 584aa    MW: 65528 Da    PI: 5.0622
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_19022.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822105.78.1e-33111529134
        DUF822  29 iyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspesslq.sslkssalaspvesysaspksssfpsps 123
                   ++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+  + +p+   +++ g+++ +s e+++  +sl+s+a+ +p++s+++ +++++++sps
  MLOC_19022.3   1 MLAGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFLSSPQPPlPPPAQFGAFQATSLETPVFtNSLNSYAVGTPLDSQASALQTDDSLSPS 97 
                   79*********************************************999******************99*************************** PP

        DUF822 124 sldsislasa.......a 134
                   slds+ +a++        
  MLOC_19022.3  98 SLDSVVVAEQciknesfG 115
                   *******98765544332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.9E-321125IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.801.2E-170144578IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514453.8E-163145578IPR017853Glycoside hydrolase superfamily
PfamPF013732.4E-80167539IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-52182196IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-52203221IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-52225246IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-52318340IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-52391410IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-52425441IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-52442453IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-52460483IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.5E-52498520IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MLAGLRQHGN FPLPARADMN DVLAALARAA GWTVHPDGTT FLSSPQPPLP PPAQFGAFQA  60
TSLETPVFTN SLNSYAVGTP LDSQASALQT DDSLSPSSLD SVVVAEQCIK NESFGNSSSA  120
NSLNCMGSDQ LLRASAVWAG DYTKTPYIPL YASLSMGIIN CYCQLVDPEA VRAELRHLKS  180
LNVDGVIVDC WWGIVEAWTP QKYEWSGYRD LFGIIKEFKL KVQVVLSFHG SGECGSGPVL  240
IALPRWVMEI AQENQDIFFT DREGRRNTEC LSWGIDKERV LRGRTGIEVY FDFMRSFHME  300
FRTLSEEGLI SAIEIGLGAS GELRYPSCSE KMGWRYPGIG EFQCYDRYMQ KNLRQSALTR  360
GHLFWARGPD NAGYYNSRSH ETGFFCDGGD YDSYYGRFFL NWYSGILIDH VDQVLSLATL  420
AFDGAAVVVK IPSIYWWYRT ASHAAELTAG FYNPTNRDGY SPVFRMLKKH SIILKVVCYG  480
PEFTVQENDE ALADPEGLTW QVMNAAWDHG LSVSVESALP CLDVDMYSRI LDTAKPRNDP  540
DRHHLSFFAY RQRTPFLLQR DVCFSELETF VKCMHGEAIQ NFVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12114757711444Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_19022.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN1793990.0FN179399.1 Hordeum vulgare subsp. vulgare partial mRNA for beta-amylase (BAM7 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149126.10.0beta-amylase 8-like isoform X1
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A287TEJ10.0A0A287TEJ1_HORVV; Beta-amylase
STRINGMLOC_19022.80.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]