PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_1876.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 391aa    MW: 43299 Da    PI: 8.7722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_1876.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-057496123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C+k F r  nL+ H r H
  MLOC_1876.1 74 FVCEVCNKGFQRDQNLQLHRRGH 96
                 89*******************88 PP
2zf-C2H213.30.00024159181123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ Cgk++  +s+ k H +++
  MLOC_1876.1 159 WRCERCGKRYAVHSDWKAHVKNC 181
                  58******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.9E-67396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.41E-77396No hitNo description
PROSITE profilePS5015710.977496IPR007087Zinc finger, C2H2
PfamPF121717.1E-57496IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0217496IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM0035589124154IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-4147179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.41E-7154179No hitNo description
SMARTSM0035599159179IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MMLCDLSSDH QQATGSNPHV LLSPLFAPAL AATSTLPLEE PARAKRKRSQ PGNPDPSAEV  60
IALSPRALVA TNRFVCEVCN KGFQRDQNLQ LHRRGHNLPW KLRHRATLPP NKPGAGAAPR  120
KRVYVCPEPT CVHHDPARAL GDLTGIKKHF SRKHGEKRWR CERCGKRYAV HSDWKAHVKN  180
CGAREYRCHC GILFSRKDTL MTHRAFCDAL AEESARLVAA ANNNSSTITT TCINDNNNSS  240
NNSGHHNNNL LMTSNSSPLF LPFSGPPHAQ NPNPLMFLSQ EPHHHQLLPP FQPLTYLDDL  300
PMTGSGSAVS THIVGFGLTP EGSLTMHAGG RRLTRDFLGV DDASELEELQ MSVPSYQEHS  360
IGPTTACCAV DLTRQYHGRL PRMNEPWSHN F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-32155224372Zinc finger protein JACKDAW
5b3h_F4e-32155224372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14149ARAKRKRSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as a flowering master switch in both long and short days, independently of the circadian clock (By similarity). Promotes flowering upstream of HD1 by up-regulating FTL1, FTL4, FTL5, FTL6, EHD1, HD3A and RFT1 (By similarity). Seems to repress FTL11 expression (By similarity). May recognize the consensus motif 5'-TTTGTCGTAAT-3' in target gene promoters (By similarity). {ECO:0000250|UniProtKB:B1B534}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00673SELEXTransfer from GRMZM2G011357Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_1876.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614560.0AK361456.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1141C05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165515.10.0protein indeterminate-domain 12-like
SwissprotB8BGV51e-152EHD2_ORYSI; Protein EARLY HEADING DATE 2
TrEMBLF2DC400.0F2DC40_HORVV; Predicted protein
STRINGMLOC_1876.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130962832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-95C2H2-like zinc finger protein