PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_18618.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 324aa MW: 37020 Da PI: 6.7905 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 109 | 131 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L Hi+ H MLOC_18618.1 109 SCSVCSRVYPTSRLLSIHISEaH 131 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 11 | 81 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 83 | 106 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5 | 108 | 131 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 110 | 131 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.33 | 146 | 171 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 324 aa Download sequence Send to blast |
MQPNPAEAME VSAPPEGEAP KDAGPWLGFW EVSRRRLTPD DPFFAAGDME RELLAKHVAL 60 DLSDDDRYQL EKMDVASVST VCCPIAGCGA HLDCLEDFED HYSTRHTASC SVCSRVYPTS 120 RLLSIHISEA HDSFFQAKVA RGFPMYECLV EGCGVKSKTY KSRQQHLVDT HQFPNSFEFF 180 KRAQPSQRHR QKYHRRQTAY KGEETRDTVM DVDGKNPRQS KSRYRPRQGD HKEPKENEHD 240 GKESKENEHD RKEPRENENH QKEAKESDME VEQKIDELSS AVSRLSTADS VPSSVTFGHR 300 RARGLTFVPR SIRQNKQASQ PEAN |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_18618.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK369462 | 0.0 | AK369462.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2091M16. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201569.1 | 0.0 | zinc finger protein 511 | ||||
TrEMBL | F2DC14 | 0.0 | F2DC14_HORVV; Predicted protein | ||||
STRING | MLOC_18618.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10911 | 26 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14140.1 | 9e-90 | zinc ion binding;nucleic acid binding;zinc ion binding |