PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_18618.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 324aa    MW: 37020 Da    PI: 6.7905
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_18618.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011109131223
                   EETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                   +C+ C+++++++ +L  Hi+  H
  MLOC_18618.1 109 SCSVCSRVYPTSRLLSIHISEaH 131
                   6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551181106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083106IPR007087Zinc finger, C2H2
SMARTSM003555108131IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280110131IPR007087Zinc finger, C2H2
SMARTSM003550.33146171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MQPNPAEAME VSAPPEGEAP KDAGPWLGFW EVSRRRLTPD DPFFAAGDME RELLAKHVAL  60
DLSDDDRYQL EKMDVASVST VCCPIAGCGA HLDCLEDFED HYSTRHTASC SVCSRVYPTS  120
RLLSIHISEA HDSFFQAKVA RGFPMYECLV EGCGVKSKTY KSRQQHLVDT HQFPNSFEFF  180
KRAQPSQRHR QKYHRRQTAY KGEETRDTVM DVDGKNPRQS KSRYRPRQGD HKEPKENEHD  240
GKESKENEHD RKEPRENENH QKEAKESDME VEQKIDELSS AVSRLSTADS VPSSVTFGHR  300
RARGLTFVPR SIRQNKQASQ PEAN
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_18618.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3694620.0AK369462.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2091M16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201569.10.0zinc finger protein 511
TrEMBLF2DC140.0F2DC14_HORVV; Predicted protein
STRINGMLOC_18618.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.19e-90zinc ion binding;nucleic acid binding;zinc ion binding