PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_18529.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | ERF | ||||||||
Protein Properties | Length: 290aa MW: 32202.1 Da PI: 4.63 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.1 | 9.1e-18 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp++ r++lg++ +aeeAa+a++ +++++g MLOC_18529.2 45 QFRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYNSAEEAARAYDVEARRIRG 94 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.907 | 45 | 102 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 45 | 104 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-35 | 45 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-21 | 45 | 103 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.09E-32 | 45 | 103 | No hit | No description |
Pfam | PF00847 | 5.9E-11 | 46 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MPHLYLFRIN SLIFISLLHS DGLKATAAGE YDCASGSAKR KRKNQFRGIR RRPWGKWAAE 60 IRDPRKGVRV WLGTYNSAEE AARAYDVEAR RIRGKKAKVN FPEEAPMASQ QRCPEPTAVK 120 VPEFNTEQKP VLNTMGNADV YSCAAVDYTL NQQFVQPQNM SFVPTMNAVE APFMNFSSDQ 180 GSNSFSCSDF SWENDIKTPD ITSVLASIPT STEVNESAFV QNNGSNSTAP PVMGNANVDL 240 ADLEPYMKFL MDDGSDESID SILSCDVPQD VVGNMDLWTF DDMPLSAGFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-21 | 44 | 109 | 13 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 52 | KRKRKNQFRGIRRRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_18529.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357064 | 0.0 | AK357064.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1045F21. | |||
GenBank | AK364431 | 0.0 | AK364431.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2025B04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183034.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-109 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A453R045 | 0.0 | A0A453R045_AEGTS; Uncharacterized protein | ||||
TrEMBL | N1R142 | 0.0 | N1R142_AEGTA; Ethylene-responsive transcription factor 1 | ||||
STRING | MLOC_18529.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.2 | 3e-36 | related to AP2 2 |