PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_18488.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 281aa MW: 31185 Da PI: 6.7356 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00058 | 249 | 271 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+ F ++ + H+++H MLOC_18488.1 249 YTCNICNLNFYSPQAFGGHMSSH 271 9*******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.203 | 249 | 276 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 251 | 271 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MDPHGSYPNQ VRSSESDANI SPLNDAPRGT TIMPILSDLF YLNPPPSDST WIGNTPPTTY 60 APYVDTMPSI IDFSNMPYQT NVSLSTLPPQ FCDAKFTPLS RVNTLTSEPN HREISENPPE 120 IFSHQDLLSN PIRNYFSSSD QMSIFCMESP SITSLLQGDP IAVVHAHLNT IGSMDDGPIF 180 EIPTRRVIKD LQTTQHGMLS HKSTYVVPTP LARVATSSHV TREDKTPLGI QNGMRDSGIV 240 HNTTYLRKYT CNICNLNFYS PQAFGGHMSS HSKARKNKIQ S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_18488.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M0V542 | 0.0 | M0V542_HORVV; Uncharacterized protein | ||||
STRING | MLOC_18488.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11492 | 6 | 12 |