PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_18488.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 281aa    MW: 31185 Da    PI: 6.7356
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_18488.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00058249271123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   y+C++C+  F ++  +  H+++H
  MLOC_18488.1 249 YTCNICNLNFYSPQAFGGHMSSH 271
                   9*******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.203249276IPR007087Zinc finger, C2H2
PROSITE patternPS000280251271IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDPHGSYPNQ VRSSESDANI SPLNDAPRGT TIMPILSDLF YLNPPPSDST WIGNTPPTTY  60
APYVDTMPSI IDFSNMPYQT NVSLSTLPPQ FCDAKFTPLS RVNTLTSEPN HREISENPPE  120
IFSHQDLLSN PIRNYFSSSD QMSIFCMESP SITSLLQGDP IAVVHAHLNT IGSMDDGPIF  180
EIPTRRVIKD LQTTQHGMLS HKSTYVVPTP LARVATSSHV TREDKTPLGI QNGMRDSGIV  240
HNTTYLRKYT CNICNLNFYS PQAFGGHMSS HSKARKNKIQ S
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_18488.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0V5420.0M0V542_HORVV; Uncharacterized protein
STRINGMLOC_18488.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11492612