PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_18401.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 826aa    MW: 92329.4 Da    PI: 6.4508
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_18401.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.6e-23134235199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+lt sd++++g +++ +++a+e+       +++++  ++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++
  MLOC_18401.1 134 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGESG 226
                   99*****************************7555544..58************************************************..44999 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   el+v+v+r+
  MLOC_18401.1 227 ELRVGVRRA 235
                   9*****996 PP
2Auxin_resp106.33.4e-35260341183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   a+ha++tk++F+v+Y+Pr+s+seF+++++k+ +++k+ +s+G+Rfkm+fe+e+++e+r++Gt+vg  +ld+  Wp+S WrsLk
  MLOC_18401.1 260 AWHAINTKTMFTVYYKPRTSRSEFIIPYDKYTESVKNIYSIGTRFKMRFEGEEAPEQRFTGTIVGSDNLDQ-LWPESSWRSLK 341
                   89******************************************************************999.9********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.27E-38127263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.8E-40128249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-20132234No hitNo description
PROSITE profilePS5086311.843134236IPR003340B3 DNA binding domain
SMARTSM010194.2E-23134236IPR003340B3 DNA binding domain
PfamPF023623.4E-21134235IPR003340B3 DNA binding domain
PfamPF065076.5E-32260341IPR010525Auxin response factor
PfamPF023093.0E-5680732IPR033389AUX/IAA domain
SuperFamilySSF542779.81E-14690773No hitNo description
PROSITE profilePS5174526.438696789IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2406.9E-4714771No hitNo description
PfamPF023092.7E-8737781IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MPPAAMPPPP PPPQGTSTGD PLYDELWHAC AGPLVTVPRV GDMVYYFPQG HIEQVEASMN  60
QVAANQMRLY DLPSKLLCRV LNVELKAEAD TDEVYAQVML MPEPEQSEAA TTTTEKSSSA  120
TGGTMPARPA VRSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMTQSPP TQELVAKDLH  180
GMEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGESGELRV GVRRAMRQLS  240
NIASSVISSH SMHLGVLATA WHAINTKTMF TVYYKPRTSR SEFIIPYDKY TESVKNIYSI  300
GTRFKMRFEG EEAPEQRFTG TIVGSDNLDQ LWPESSWRSL KVRWDESSTI PRPDRVSPWE  360
IEPASSPPVN PLPLSRAKRS RPNVPPASPE SSVRTKEGAT KADMDCAQAQ RNQNNTVLPG  420
HEQRSNKLTD INDFDATVQK PMVWSTPPPN IGKNNPLTFQ QRPSVHNSIQ LRRREADFKD  480
ASSGAQHFGD SLGFFMQTTF DEAPNRLGSF KNQFQDHSYA RQFADPYLFM HQQPSLTVES  540
SRKMHTENNE LHFWNGPGTV YGNSIDHVQD FRFKEHPSNW LSPQFSRAEQ PRVIRPHASI  600
APIELEKTTE GSDFKIFGFK VDTASAGFNH LNSPMAATHE PVLQTQPSVS LDHLQTDCSP  660
EVSLSIAGTT DNEKNIQQCP QSSKDVQSKS HGASTRSCTK VHKQGVALGR SVDLSKFVDY  720
DELTAELDKM FDFDGELMSS NKNWQIVYTD NEGDMMLVGD DPWEEFCSMV RKICIYTKEE  780
VQKMNSKPSD ARKEEGSVEG DGATEKAHLP VSSDLNSSQL GCVKAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1671536612357Auxin response factor 1
4ldw_A1e-1671536612357Auxin response factor 1
4ldw_B1e-1671536612357Auxin response factor 1
4ldx_A1e-1661536612357Auxin response factor 1
4ldx_B1e-1661536612357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_18401.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727980.0AK372798.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3013C04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197968.10.0auxin response factor 4-like
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLM0V4Y90.0M0V4Y9_HORVV; Auxin response factor
STRINGMLOC_18401.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]