PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_18272.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | HB-other | ||||||||
Protein Properties | Length: 163aa MW: 18825.1 Da PI: 4.9673 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.2 | 1.8e-10 | 90 | 129 | 15 | 54 |
HHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 15 LeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 L ++F ryps +e+ +LA ++gL+ rq+++WF N R + MLOC_18272.3 90 LFNHFLDPRYPSDNEKLRLAVSTGLSRRQISNWFINARVR 129 55789999******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 5.7E-11 | 71 | 137 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.03E-11 | 73 | 134 | No hit | No description |
SuperFamily | SSF46689 | 5.13E-16 | 76 | 141 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.3E-24 | 76 | 139 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.2E-15 | 89 | 129 | IPR008422 | Homeobox KN domain |
PROSITE profile | PS50071 | 12.05 | 90 | 133 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MSRAMTRHFG NLRRAILRKL ATLWVVDEDS EEEEEDGDEY DYDPARRQED MVGRLVRRTK 60 QAAAARAAEQ VCKPMRVLPE ESVAVLRAWL FNHFLDPRYP SDNEKLRLAV STGLSRRQIS 120 NWFINARVRL WKPMIEEMYA DEFSEDSSAV SSRDDGDAAA SSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 2e-15 | 75 | 137 | 2 | 63 | Homeobox protein Meis2 |
4xrm_B | 2e-15 | 75 | 137 | 2 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_18272.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373388 | 0.0 | AK373388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3029F10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149612.1 | 1e-64 | BEL1-like homeodomain protein 3 | ||||
TrEMBL | A0A287MYZ8 | 1e-115 | A0A287MYZ8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_18272.3 | 1e-116 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75430.1 | 3e-34 | BEL1-like homeodomain 11 |