PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_18177.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 94aa MW: 10083.5 Da PI: 8.5034 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30 | 1.2e-09 | 12 | 34 | 22 | 46 |
T-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46 + W+ Ia++++ gRt++++k++w++ MLOC_18177.5 12 R-WAQIAKHLP-GRTDNEVKNFWNS 34 4.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.329 | 1 | 40 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-7 | 10 | 34 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.17E-8 | 11 | 42 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-12 | 11 | 41 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-7 | 12 | 33 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 94 aa Download sequence Send to blast |
MCLVRCDLLR CRWAQIAKHL PGRTDNEVKN FWNSTIKKKL ISQAVGSLHS DLYYNILDGA 60 GQGIAAAGCA SLSVLDNAAQ AVATQCPPSS VHNS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_18177.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK372926 | 4e-67 | AK372926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3016B12. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969714.1 | 8e-40 | transcription factor MYB86 isoform X2 | ||||
TrEMBL | A0A287LFS4 | 4e-62 | A0A287LFS4_HORVV; Uncharacterized protein | ||||
STRING | Si002319m | 3e-39 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13890.2 | 4e-16 | myb domain protein 26 |