PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_18177.5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 94aa    MW: 10083.5 Da    PI: 8.5034
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_18177.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-0912342246
                     T-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
                     + W+ Ia++++ gRt++++k++w++
     MLOC_18177.5 12 R-WAQIAKHLP-GRTDNEVKNFWNS 34
                     4.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.329140IPR017930Myb domain
PfamPF002491.1E-71034IPR001005SANT/Myb domain
SuperFamilySSF466891.17E-81142IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-121141IPR009057Homeodomain-like
CDDcd001671.05E-71233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MCLVRCDLLR CRWAQIAKHL PGRTDNEVKN FWNSTIKKKL ISQAVGSLHS DLYYNILDGA  60
GQGIAAAGCA SLSVLDNAAQ AVATQCPPSS VHNS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_18177.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3729264e-67AK372926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3016B12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969714.18e-40transcription factor MYB86 isoform X2
TrEMBLA0A287LFS44e-62A0A287LFS4_HORVV; Uncharacterized protein
STRINGSi002319m3e-39(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.24e-16myb domain protein 26