PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_17927.6

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 1032aa MW: 116330 Da PI: 7.6543

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_17927.6	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.6	3.5e-07	62	107	2	47
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 fY Y++++GF+ r+ ++++s +g +++++f C + ++ ++ +k MLOC_17927.6 62 FYYGYGERAGFKARTGSNRRSAGTGAMIMQRFLCCRGNYSYRKGNK 107 9*********************************998777766665 PP
2	FAR1	77.8	2.1e-24	382	468	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA ++GF+vrk s+k+ n+ + +r +vCskeg+r+++ ++ +++++raetrtgC+a+++vk +++gk++vt+ + +HnH+l MLOC_17927.6 382 EFYVSYAGTAGFNVRKGCSEKT-ANNVTRSRAYVCSKEGFRHKSVTA--ETKKQRAETRTGCEAHMTVKITTSGKYVVTEYVADHNHDLE 468 6***************9999.66669***********9988..999*********************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.9E-22	382	468	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-23	568	662	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.287	836	883	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.0E-6	836	880	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.1E-6	858	885	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1032 aa Download sequence Send to blast
MMEVVRKDSV AGAGAVGEEG KWKVSKLVAE HNHGLDAAPA GEAAAAPALG MEFDSVHDAK 60 GFYYGYGERA GFKARTGSNR RSAGTGAMIM QRFLCCRGNY SYRKGNKARD SDAAKEVAEG 120 AAGEGEGEGK AGAHKKRGRK PGKKSTPVIE LENSVEKGVA RAAAGNGQVV PSTKNLGRGG 180 DTKDVAEKDV ESVVELEEEH DEVEDATHDG AHDLGDGDGA NSDADEDEME KEVKVKEKRG 240 RGRPRKAVTE GNALQACAST DLGVTASQCA IDERKKILHK YLSKRQSRPS SGRPAKIVSR 300 QALAERRKRG DGGRFLASDG PLPSERRSKR LEKQNLQNEK KPESKEDEIV EAEQDPETEV 360 VAGPGGEPKV GMVFLNEDKA YEFYVSYAGT AGFNVRKGCS EKTANNVTRS RAYVCSKEGF 420 RHKSVTAETK KQRAETRTGC EAHMTVKITT SGKYVVTEYV ADHNHDLEAP VVDIQILRSQ 480 KLLAKLQQPL DPPKVVLIPN DYKNYIRTRH TKDMQLGDAR AISEYLQRMK GQNPSFFYSI 540 QVDEDDQFRN VFWADVKSMM DFNYFGDVVC VDTRYSTSDY CRPLFLFIGV NHHKQPTIFG 600 TAFIYDESVE SFKWLFETFK SAMSGNQPRT VLTDSCTTIS DAVDAAWPGT AHRFSLLHLY 660 QNATKVLRDT FQGSETFAHD FSRSLYDYEE EGDFLSSWEI LLAKYNLKDN EWLSKLYEER 720 ERWALPYGRD IFCADIAATL RNDYVDAILT DVLKTEIDLP HFFNRYDKFL EEKRLAEQQA 780 DYLGVQMTQR VPPLRLLWQA ANTYTPALFE MFRLEFELVL ACMVYCCGEI GPISEYEVTV 840 KNRPQVHFVR FDSSEYMVVC SCKKFEFVGL PCCHVLKVLE IKNIKELPPR YILKRWRKDA 900 QSESTKENFG FAAVDEDPKF MVSKRHNSLY RTLYKVAAKA AENIEGQRFM ESQYDQLLEQ 960 VEILLQAKLH DKPSLSTIMR SQQPNLLQND TSNSEPRRAS SKKNKNVENR RRQQSPLESS 1020 KKKKGRQGMF IT

Sequence ? help Back to Top

Protein Sequence Length: 1032 aa Download sequence Send to blast

MMEVVRKDSV AGAGAVGEEG KWKVSKLVAE HNHGLDAAPA GEAAAAPALG MEFDSVHDAK  60
GFYYGYGERA GFKARTGSNR RSAGTGAMIM QRFLCCRGNY SYRKGNKARD SDAAKEVAEG  120
AAGEGEGEGK AGAHKKRGRK PGKKSTPVIE LENSVEKGVA RAAAGNGQVV PSTKNLGRGG  180
DTKDVAEKDV ESVVELEEEH DEVEDATHDG AHDLGDGDGA NSDADEDEME KEVKVKEKRG  240
RGRPRKAVTE GNALQACAST DLGVTASQCA IDERKKILHK YLSKRQSRPS SGRPAKIVSR  300
QALAERRKRG DGGRFLASDG PLPSERRSKR LEKQNLQNEK KPESKEDEIV EAEQDPETEV  360
VAGPGGEPKV GMVFLNEDKA YEFYVSYAGT AGFNVRKGCS EKTANNVTRS RAYVCSKEGF  420
RHKSVTAETK KQRAETRTGC EAHMTVKITT SGKYVVTEYV ADHNHDLEAP VVDIQILRSQ  480
KLLAKLQQPL DPPKVVLIPN DYKNYIRTRH TKDMQLGDAR AISEYLQRMK GQNPSFFYSI  540
QVDEDDQFRN VFWADVKSMM DFNYFGDVVC VDTRYSTSDY CRPLFLFIGV NHHKQPTIFG  600
TAFIYDESVE SFKWLFETFK SAMSGNQPRT VLTDSCTTIS DAVDAAWPGT AHRFSLLHLY  660
QNATKVLRDT FQGSETFAHD FSRSLYDYEE EGDFLSSWEI LLAKYNLKDN EWLSKLYEER  720
ERWALPYGRD IFCADIAATL RNDYVDAILT DVLKTEIDLP HFFNRYDKFL EEKRLAEQQA  780
DYLGVQMTQR VPPLRLLWQA ANTYTPALFE MFRLEFELVL ACMVYCCGEI GPISEYEVTV  840
KNRPQVHFVR FDSSEYMVVC SCKKFEFVGL PCCHVLKVLE IKNIKELPPR YILKRWRKDA  900
QSESTKENFG FAAVDEDPKF MVSKRHNSLY RTLYKVAAKA AENIEGQRFM ESQYDQLLEQ  960
VEILLQAKLH DKPSLSTIMR SQQPNLLQND TSNSEPRRAS SKKNKNVENR RRQQSPLESS  1020
KKKKGRQGMF IT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	237	245	KRGRGRPRK
2	1009	1023	RRRQQSPLESSKKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_17927.6

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK360042	0.0	AK360042.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1108P13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187513.1	0.0	protein FAR1-RELATED SEQUENCE 7-like isoform X1
TrEMBL	F2D830	0.0	F2D830_HORVV; Predicted protein
STRING	MLOC_17927.2	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-109	FAR1-related sequence 5