PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_17927.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 668aa    MW: 73594.3 Da    PI: 7.9475
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_17927.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.41.9e-0762107247
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 
                   fY  Y++++GF+ r+ ++++s  +g +++++f C +  ++ ++ +k
  MLOC_17927.5  62 FYYGYGERAGFKARTGSNRRSAGTGAMIMQRFLCCRGNYSYRKGNK 107
                   9*********************************998777766666 PP
2FAR178.61.2e-24382468190
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   +fY +YA ++GF+vrk  s+k+  n+ + +r +vCskeg+r+++ ++  +++++raetrtgC+a+++vk +++gk++vt+ + +HnH+l 
  MLOC_17927.5 382 EFYVSYAGTAGFNVRKGCSEKT-ANNVTRSRAYVCSKEGFRHKSVTA--ETKKQRAETRTGCEAHMTVKITTSGKYVVTEYVADHNHDLE 468
                   6*****************9999.66669***************9988..999***********************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-462109IPR004330FAR1 DNA binding domain
PfamPF031014.4E-22382468IPR004330FAR1 DNA binding domain
PfamPF105511.0E-23568662IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MMEVVRKDSV AGAGAVGEEG KWKVSKLVAE HNHGLDAAPA GEAAAAPALG MEFDSVHDAK  60
GFYYGYGERA GFKARTGSNR RSAGTGAMIM QRFLCCRGNY SYRKGNKARD SDAAKEVAEG  120
AAGEGEGEGK AGAHKKRGRK PGKKSTPVIE LENSVEKGVA RAAAGNGQVV PSTKNLGRGG  180
DTKDVAEKDV ESVVELEEEH DEVEDATHDG AHDLGDGDGA NSDADEDEME KEVKVKEKRG  240
RGRPRKAVTE GNALQACAST DLGVTASQCA IDERKKILHK YLSKRQSRPS SGRPAKIVSR  300
QALAERRKRG DGGRFLASDG PLPSERRSKR LEKQNLQNEK KPESKEDEIV EAEQDPETEV  360
VAGPGGEPKV GMVFLNEDKA YEFYVSYAGT AGFNVRKGCS EKTANNVTRS RAYVCSKEGF  420
RHKSVTAETK KQRAETRTGC EAHMTVKITT SGKYVVTEYV ADHNHDLEAP VVDIQILRSQ  480
KLLAKLQQPL DPPKVVLIPN DYKNYIRTRH TKDMQLGDAR AISEYLQRMK GQNPSFFYSI  540
QVDEDDQFRN VFWADVKSMM DFNYFGDVVC VDTRYSTSDY CRPLFLFIGV NHHKQPTIFG  600
TAFIYDESVE SFKWLFETFK SAMSGNQPRT VLTDSCTTIS DAVDAAWPGT AHRFSLLHLY  660
QNATKVRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237245KRGRGRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_17927.5
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3600420.0AK360042.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1108P13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187514.10.0protein FAR1-RELATED SEQUENCE 7-like isoform X2
TrEMBLA0A287ED540.0A0A287ED54_HORVV; Uncharacterized protein
STRINGMLOC_17927.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-60FAR1-related sequence 5