PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_17690.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bZIP

Protein Properties

Length: 567aa MW: 62411.6 Da PI: 6.9725

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_17690.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.2	2.6e-11	261	289	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k +rr+++NReAAr+sR+RKka+i++Le MLOC_17690.2 261 KTTRRLAQNREAARKSRLRKKAYIQQLES 289 789************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-7	257	320	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.071	259	303	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.91E-7	260	302	No hit	No description
Pfam	PF00170	2.5E-8	261	297	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.26E-20	261	313	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.6E-8	262	305	No hit	No description
PROSITE pattern	PS00036	0	264	279	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.8E-30	341	415	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
MQKPSSQERK ELLYWEWEIE AARVLAWRSI MEEASSSSGH PRHRGPPPPP HHVLGYGGFH 60 AAMAVPTNSM PPATFFSEQD GGGGAYFGEL EEALMHQVAT LSSGGRRISH SHSHSQQQTA 120 TATSTAQPHH HHHHHGHNHA MPFPSTVADT ATAAAAEAAA RPPPTLDIFP SWPLALHHHH 180 HTPKEGSNVT ADSTDSESSS KNNINMDSSD HHHHQQQQGM AGLVTVAAQF HQISQQQHHQ 240 QQKMATSSTH SDRTGKALDP KTTRRLAQNR EAARKSRLRK KAYIQQLESG KLKLAQLEQD 300 LQRARSQGLL VGGAPSGNSS PGAAMFDVEY NRWLDDDSRR MIELRGGLHA HLPDGDLRAI 360 IDDTLTHYDE LFRLKSAAAR ADVFHLITGM WATPAERCFL WMGGFRPSDL LKTLAPQLDP 420 LTEQQMVGIC SLEQSLQQAE EALTQGLEQL HQSLAVTVAG SGSLSDDTNM GSFMGDMAVA 480 LGKLANLEGF VIQADNLRQQ TLHQMHRILT VRQAARCFLA IGEYHNRLRA LSSLWASRPR 540 EILMTDEGNC GELSIAAHPS ESQYSAF

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

MQKPSSQERK ELLYWEWEIE AARVLAWRSI MEEASSSSGH PRHRGPPPPP HHVLGYGGFH  60
AAMAVPTNSM PPATFFSEQD GGGGAYFGEL EEALMHQVAT LSSGGRRISH SHSHSQQQTA  120
TATSTAQPHH HHHHHGHNHA MPFPSTVADT ATAAAAEAAA RPPPTLDIFP SWPLALHHHH  180
HTPKEGSNVT ADSTDSESSS KNNINMDSSD HHHHQQQQGM AGLVTVAAQF HQISQQQHHQ  240
QQKMATSSTH SDRTGKALDP KTTRRLAQNR EAARKSRLRK KAYIQQLESG KLKLAQLEQD  300
LQRARSQGLL VGGAPSGNSS PGAAMFDVEY NRWLDDDSRR MIELRGGLHA HLPDGDLRAI  360
IDDTLTHYDE LFRLKSAAAR ADVFHLITGM WATPAERCFL WMGGFRPSDL LKTLAPQLDP  420
LTEQQMVGIC SLEQSLQQAE EALTQGLEQL HQSLAVTVAG SGSLSDDTNM GSFMGDMAVA  480
LGKLANLEGF VIQADNLRQQ TLHQMHRILT VRQAARCFLA IGEYHNRLRA LSSLWASRPR  540
EILMTDEGNC GELSIAAHPS ESQYSAF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_17690.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK370288	0.0	AK370288.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2108D19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020146200.1	0.0	transcription factor TGAL4-like isoform X1
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	F2E2B7	0.0	F2E2B7_HORVV; Predicted protein
STRING	MLOC_17690.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-136	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]