PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_17690.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bZIP

Protein Properties

Length: 566aa MW: 62324.6 Da PI: 6.9725

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_17690.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.2	2.6e-11	260	288	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k +rr+++NReAAr+sR+RKka+i++Le MLOC_17690.1 260 KTTRRLAQNREAARKSRLRKKAYIQQLES 288 789************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-7	256	319	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.071	258	302	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.83E-7	259	301	No hit	No description
Pfam	PF00170	2.5E-8	260	296	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.24E-20	260	312	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.6E-8	261	304	No hit	No description
PROSITE pattern	PS00036	0	263	278	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.8E-30	340	414	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence Send to blast
MQKPSSQERK ELLYWEWEIE AARVLAWRSI MEEASSSSGH PRHRGPPPPP HHVLGYGGFH 60 AAMAVPTNSM PPATFFEQDG GGGAYFGELE EALMHQVATL SSGGRRISHS HSHSQQQTAT 120 ATSTAQPHHH HHHHGHNHAM PFPSTVADTA TAAAAEAAAR PPPTLDIFPS WPLALHHHHH 180 TPKEGSNVTA DSTDSESSSK NNINMDSSDH HHHQQQQGMA GLVTVAAQFH QISQQQHHQQ 240 QKMATSSTHS DRTGKALDPK TTRRLAQNRE AARKSRLRKK AYIQQLESGK LKLAQLEQDL 300 QRARSQGLLV GGAPSGNSSP GAAMFDVEYN RWLDDDSRRM IELRGGLHAH LPDGDLRAII 360 DDTLTHYDEL FRLKSAAARA DVFHLITGMW ATPAERCFLW MGGFRPSDLL KTLAPQLDPL 420 TEQQMVGICS LEQSLQQAEE ALTQGLEQLH QSLAVTVAGS GSLSDDTNMG SFMGDMAVAL 480 GKLANLEGFV IQADNLRQQT LHQMHRILTV RQAARCFLAI GEYHNRLRAL SSLWASRPRE 540 ILMTDEGNCG ELSIAAHPSE SQYSAF

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence Send to blast

MQKPSSQERK ELLYWEWEIE AARVLAWRSI MEEASSSSGH PRHRGPPPPP HHVLGYGGFH  60
AAMAVPTNSM PPATFFEQDG GGGAYFGELE EALMHQVATL SSGGRRISHS HSHSQQQTAT  120
ATSTAQPHHH HHHHGHNHAM PFPSTVADTA TAAAAEAAAR PPPTLDIFPS WPLALHHHHH  180
TPKEGSNVTA DSTDSESSSK NNINMDSSDH HHHQQQQGMA GLVTVAAQFH QISQQQHHQQ  240
QKMATSSTHS DRTGKALDPK TTRRLAQNRE AARKSRLRKK AYIQQLESGK LKLAQLEQDL  300
QRARSQGLLV GGAPSGNSSP GAAMFDVEYN RWLDDDSRRM IELRGGLHAH LPDGDLRAII  360
DDTLTHYDEL FRLKSAAARA DVFHLITGMW ATPAERCFLW MGGFRPSDLL KTLAPQLDPL  420
TEQQMVGICS LEQSLQQAEE ALTQGLEQLH QSLAVTVAGS GSLSDDTNMG SFMGDMAVAL  480
GKLANLEGFV IQADNLRQQT LHQMHRILTV RQAARCFLAI GEYHNRLRAL SSLWASRPRE  540
ILMTDEGNCG ELSIAAHPSE SQYSAF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_17690.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK370288	0.0	AK370288.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2108D19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020146201.1	0.0	transcription factor TGAL4-like isoform X2
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A446R1A3	0.0	A0A446R1A3_TRITD; Uncharacterized protein
STRING	MLOC_17690.2	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-136	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]