PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_17236.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Dof
Protein Properties Length: 356aa    MW: 35366 Da    PI: 9.7072
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_17236.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.81.1e-3845105262
        zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                   +e  lkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GG+lrnvPvGgg+r+nk+++
  MLOC_17236.1  45 PEPGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGTLRNVPVGGGCRRNKRTK 105
                   56789*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-3632103IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.44149103IPR003851Zinc finger, Dof-type
PfamPF027013.2E-3249103IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105187IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGSAVALSGA GGGGGGGAGG GPTGGAVVRP GSMTDRARMA KIPQPEPGLK CPRCESTNTK  60
FCYFNNYSLT QPRHFCKTCR RYWTRGGTLR NVPVGGGCRR NKRTKSSKSS SSAASASGGG  120
TSSSTTSSTT TAGGGNGNGS SAAAAAGVMM SSQGQGHGQM PFFGSLHPLG AGNGDHYGTG  180
ASRLGFPGLD PVDYQLGAGG AAAAAMGLEP WRLPQMQQFP FFGRADGMHQ QQQQMAGLYP  240
FDTADASGFA GEMMGVVGGS KQQVPGSAGL ITQLASVKME DNPPSNNAMA GAASAREFLG  300
LPGNIQFWGG GNNGAGSNDN GGSHSSGTVA PGGAAGGGGW VDHLPGFNSS SSGNLL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_17236.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM0843490.0AM084349.1 Hordeum vulgare subsp. vulgare dof1 gene for dof zinc finger protein 1, exons 1-2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197596.11e-164dof zinc finger protein DOF2.4-like isoform X1
RefseqXP_020197597.11e-164dof zinc finger protein DOF2.4-like isoform X2
TrEMBLA0A287SS060.0A0A287SS06_HORVV; Uncharacterized protein
TrEMBLA0A287SS630.0A0A287SS63_HORVV; Uncharacterized protein
STRINGMLOC_17236.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.12e-42OBF-binding protein 3