PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_17128.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 370aa    MW: 41366.8 Da    PI: 6.9622
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_17128.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.35.2e-52101401128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                   +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+   ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ 
  MLOC_17128.1  10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFL 105
                   69****************************.9***************943444442456*************************************9 PP

           NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + + +g++ktLvfy grap+g+ktdW+mheyrl
  MLOC_17128.1 106 GsGARRIGMRKTLVFYVGRAPHGKKTDWIMHEYRL 140
                   756778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-595160IPR003441NAC domain
PROSITE profilePS5100558.21610160IPR003441NAC domain
PfamPF023658.3E-2811140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MHPSGGVLSV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGSGAR RIGMRKTLVF  120
YVGRAPHGKK TDWIMHEYRL DEDNVEVQED GWVVCRVFTK KSYTRGMNPA EMAGYDDDEL  180
LHPFPVPASA TGAMQMTTDQ KHMMHNHGPG HLMQQHGQQH YDFPSFDVSM QLPQLMSAEH  240
EQQTLSSFLP GAGAPDAVAM SSLDVQCSQN LMKLTSSGTN GMLHHSGGGG DPRFPGTDWS  300
ILDKLLASHQ NLDQLFQGKV AAAAAASMAP YQQQQLMEQL GGSSSSTSSM QRMPLQYLGC  360
EAADLLRFSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-51816215167NO APICAL MERISTEM PROTEIN
1ut4_B2e-51816215167NO APICAL MERISTEM PROTEIN
1ut7_A2e-51816215167NO APICAL MERISTEM PROTEIN
1ut7_B2e-51816215167NO APICAL MERISTEM PROTEIN
4dul_A2e-51816215167NAC domain-containing protein 19
4dul_B2e-51816215167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_17128.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281860.0AB028186.1 Oryza sativa mRNA for OsNAC7 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169406.10.0NAC domain-containing protein 76
SwissprotQ5Z6B61e-123NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLM0V2610.0M0V261_HORVV; Uncharacterized protein
STRINGMLOC_17128.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.32e-93NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]