PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_17061.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | GATA | ||||||||
Protein Properties | Length: 176aa MW: 19165.4 Da PI: 10.5348 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.3 | 3.8e-17 | 71 | 107 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt Tp++Rrgp+g++tLCnaCGl+++ kg+ MLOC_17061.4 71 CHHCGTNAhnTPMMRRGPEGPRTLCNACGLMWANKGM 107 ******9999***********************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06203 | 2.2E-14 | 1 | 38 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.481 | 1 | 38 | IPR010402 | CCT domain |
SMART | SM00401 | 6.2E-13 | 65 | 118 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.117 | 65 | 122 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.81E-12 | 69 | 124 | No hit | No description |
CDD | cd00202 | 4.90E-14 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.4E-16 | 70 | 111 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 71 | 98 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.2E-14 | 71 | 106 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MRFREKRKER NFDKKIRYTV RKEVALRMQR NRGQFTSSKP KPDEGTSELA TADGSPNWGS 60 VEGRPPSAAA CHHCGTNAHN TPMMRRGPEG PRTLCNACGL MWANKGMLRD LAKSTPQSLQ 120 MMATAPNDSQ NGNTLSQQNG NALSQQNGNA AIVPFAEQQT LAQATDANGH SHGSST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_17061.4 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363160 | 1e-180 | AK363160.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2013C24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192767.1 | 1e-118 | GATA transcription factor 20-like isoform X3 | ||||
Swissprot | Q5Z4U5 | 2e-76 | GAT20_ORYSJ; GATA transcription factor 20 | ||||
TrEMBL | A0A287XHW1 | 1e-126 | A0A287XHW1_HORVV; Uncharacterized protein | ||||
STRING | MLOC_17061.4 | 1e-129 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4325 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 6e-50 | ZIM-LIKE 2 |