PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_16981.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 320aa    MW: 34954.4 Da    PI: 6.8233
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_16981.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85e-184690147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rgr+T+eE++l++ +++  G++ W+ Ia++++ gRt++++k++w+++
     MLOC_16981.2 46 RGRFTPEEEKLIISLHAIVGNR-WAHIASHLP-GRTDNEIKNYWNSW 90
                     89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-112652IPR009057Homeodomain-like
SuperFamilySSF466891.58E-222698IPR009057Homeodomain-like
PROSITE profilePS500904.0542740IPR017877Myb-like domain
PROSITE profilePS5129426.3874195IPR017930Myb domain
SMARTSM007171.2E-174593IPR001005SANT/Myb domain
PfamPF002491.1E-164690IPR001005SANT/Myb domain
CDDcd001677.94E-144891No hitNo description
Gene3DG3DSA:1.10.10.603.4E-215391IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MRSSSATSPP MAMAAGARSP KKPGLQRCGK SCRLRWINYL RPDIRRGRFT PEEEKLIISL  60
HAIVGNRWAH IASHLPGRTD NEIKNYWNSW IKKKIRKAPA APNVTTTSST TSTSPPNNGL  120
APCSGSTATS DVHHRRLQHP TFSCAPAGDH LQLDAIISHH QSTSLALPVA AGQDSPPGMS  180
HHCPLFMFDA GVVSTPFASA SAQQHPFIAS FTAAMAEADT PSCYHLPPLV DGMGAMGMCM  240
EAMDDHCSAG AGMGNVCFGD EQRQRRRPEL EEEEREQLGQ HEQWDEEQLL MWDDQEVLTP  300
SNMEAIQNGA HSLLFMGPNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-21279540108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_16981.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118081e-113AK111808.1 Oryza sativa Japonica Group cDNA clone:J013114D05, full insert sequence.
GenBankAK1121171e-113AK112117.1 Oryza sativa Japonica Group cDNA clone:002-129-C03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193359.10.0myb-related protein Hv1-like
TrEMBLM0V1S80.0M0V1S8_HORVV; Uncharacterized protein
STRINGMLOC_16981.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.12e-44myb domain protein 103