PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_16598.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 233aa    MW: 26747.2 Da    PI: 6.3084
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_16598.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431.1e-13117163147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g WTteE+ l++++ +  G g Wk I++++ + Rt+ q+ s+ qky
     MLOC_16598.2 117 KGYWTTEEHRLFLRGLHVCGRGKWKDISKYFVTSRTPAQISSHAQKY 163
                      789*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.026112168IPR017930Myb domain
SMARTSM007174.9E-10116166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-11117163IPR009057Homeodomain-like
PfamPF002493.0E-11117163IPR001005SANT/Myb domain
SuperFamilySSF466892.83E-16117169IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-12119166IPR006447Myb domain, plants
CDDcd001671.31E-8120164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MNQRVNQEWN PSEVEGARSI IDFLNNYYNN DGTNHDKNKK HAIVANLQGR FPRKTMQQNF  60
GLQEEVDMEG MGLLFGHPLE TMPTMEIQEE VPIVEENKVE LENKMCIHQP VIAAHAKGYW  120
TTEEHRLFLR GLHVCGRGKW KDISKYFVTS RTPAQISSHA QKYFMKLQKE GSGIQRYSIN  180
NVELDAADPW KMDNSFNFWQ ALALQSTIGA SDQNPTLDVQ TPLGPFVTMN NTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_16598.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156757.11e-134uncharacterized protein LOC109742093
TrEMBLA0A287VRG31e-176A0A287VRG3_HORVV; Uncharacterized protein
STRINGMLOC_16598.11e-169(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09450.14e-18MYB_related family protein