PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_16096.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bZIP

Protein Properties

Length: 333aa MW: 36164.7 Da PI: 9.9187

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_16096.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.8	3.1e-15	266	308	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lkk MLOC_16096.1 266 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLKK 308 69***************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.9E-12	262	320	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.702	264	309	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.2E-15	266	309	No hit	No description
Pfam	PF00170	1.9E-12	266	309	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.0E-11	266	310	No hit	No description
CDD	cd14707	2.21E-25	266	311	No hit	No description
PROSITE pattern	PS00036	0	269	284	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MGSRKMASQP GRGTGGDAGT SQRGQVQSLA RQGSLYSLTL DEVQNHLGEP LQSMNLDELL 60 RTVFPDDLEP DGATTSQYVP SSSLMRQGSI TMPTELSKKT VDEVWKGIQD APKGSVQGGG 120 RRKRERQPTL GEMTLEDFLV QAGVVTQGFL KDTGDAGNLG LVGRGATAAG AADLTSGAQW 180 LGQYQQQIAA APIDTPQHGH QIVPAAYMPI QFVPKPLNVV GPGATLGSAY SDGQSTSPMI 240 SPISDSQTPG RKRGVSGDVP NKFVERRQKR MIKNRESAAR SRARKQAYTN ELENKVSRLE 300 EENERLKKQK VFSSQYKFTE MPHFPVEVRL PDK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	126	GRRKRERQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_16096.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373919	0.0	AK373919.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3047H22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190743.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
Refseq	XP_020190744.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
Refseq	XP_020190745.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X2
Swissprot	Q9LES3	2e-73	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	F2ECP4	0.0	F2ECP4_HORVV; Predicted protein
STRING	MLOC_16096.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2707	38	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	8e-76	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]