PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_15850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 297aa    MW: 32595.6 Da    PI: 6.7523
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_15850.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014265287123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   y+C++C+ +F+++  +  H+++H
  MLOC_15850.1 265 YTCKICSATFNTSQAYGGHMSSH 287
                   9*******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.9E-7265289IPR007087Zinc finger, C2H2
PROSITE profilePS501579.619265292IPR007087Zinc finger, C2H2
PROSITE patternPS000280267287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MHSILHSIYF KLLTLLVAMD PNDSYANISP LHEALRGTTA MPTLNDFVPL ESPSSDSPLV  60
GNSLQTIHAP REATLFSEND STMIPYQSNT YLAPLPPQLS DTIPNPSSLE ENEMFSHDFL  120
TNPFWNEFDS SHQKQKFSME VSSFTSLLRK EPNSIAHSLL NTVGESDDGS ISKMATRLVS  180
KVNPLPSRHL CSPEKIHPFT PSTMQQEQNI QDGRLLHGAP YGLPAPGSLV MQSSHAPRED  240
KIPLVGPNGN STSANMHGST ISRKYTCKIC SATFNTSQAY GGHMSSHSKA RMKSLQS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_15850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0UZ310.0M0UZ31_HORVV; Uncharacterized protein
STRINGMLOC_15850.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11492612