PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_15850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 297aa MW: 32595.6 Da PI: 6.7523 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 265 | 287 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+ +F+++ + H+++H MLOC_15850.1 265 YTCKICSATFNTSQAYGGHMSSH 287 9*******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 4.9E-7 | 265 | 289 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.619 | 265 | 292 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 267 | 287 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MHSILHSIYF KLLTLLVAMD PNDSYANISP LHEALRGTTA MPTLNDFVPL ESPSSDSPLV 60 GNSLQTIHAP REATLFSEND STMIPYQSNT YLAPLPPQLS DTIPNPSSLE ENEMFSHDFL 120 TNPFWNEFDS SHQKQKFSME VSSFTSLLRK EPNSIAHSLL NTVGESDDGS ISKMATRLVS 180 KVNPLPSRHL CSPEKIHPFT PSTMQQEQNI QDGRLLHGAP YGLPAPGSLV MQSSHAPRED 240 KIPLVGPNGN STSANMHGST ISRKYTCKIC SATFNTSQAY GGHMSSHSKA RMKSLQS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_15850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M0UZ31 | 0.0 | M0UZ31_HORVV; Uncharacterized protein | ||||
STRING | MLOC_15850.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11492 | 6 | 12 |