PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_15776.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family BBR-BPC
Protein Properties Length: 331aa    MW: 36526.2 Da    PI: 9.7025
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_15776.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind380.33.2e-11613311301
     GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalll 86 
                   md+ g+re  r++   y+        p++++k++ +++l+++++erd++i er++al+ekkaa+aerdmaf+qrd+a+aern+a+verdn+l+al+l
  MLOC_15776.2   1 MDNVGHREdgRQRQdSYKalhtqwmmPQRQMKDHHSMNLLALMSERDNAIMERDHALAEKKAAMAERDMAFAQRDSAMAERNAAIVERDNALAALEL 97 
                   89999998898887788889999998889******************************************************************99 PP

     GAGA_bind  87 vensla...salpvgvqvlsgtksidslqqlse.....pqledsave.lreeeklealpieeaaee.akekkkkkkrqrakkpkekkak..kkkkks 171
                   ++++     + ++++ ++l+g+k+ ++++q+ +      ql+d +++ +re+++++a+pi++a+ + a ++kk+kk++++ +p+++ +   +k+kk 
  MLOC_15776.2  98 ARTNGFnmnNGNGFNPGSLNGAKNFHHHDQQPHaqslpLQLADAPYDhAREMHISDAYPISTAPVSaAGKAKKPKKNSSQGSPLKRPSGvlRKTKKA 194
                   88875545578888899***********99888889999********9*************9976615789999***********999988788889 PP

     GAGA_bind 172 ekskkkvkkesader.......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmS 261
                   + ++++v  ++  e+       +k+e+k++dl+ln+vs+Des++P+P+CsCtG+lrqCYkWGnGGWqS+CCt+++S yPLPv++++r+aR++grKmS
  MLOC_15776.2 195 AGDWRDVGISGGGEDpahvasvMKNEWKDQDLGLNQVSFDESSMPAPACSCTGVLRQCYKWGNGGWQSSCCTMSMSLYPLPVMPNKRHARMGGRKMS 291
                   999***9998866556789999*************************************************************************** PP

     GAGA_bind 262 qgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                   ++af+klL++LaaeG+dls  vDLkdhWAkHGtn+++tir
  MLOC_15776.2 292 GSAFTKLLSRLAAEGHDLSASVDLKDHWAKHGTNRYITIR 331
                   ***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.4E-1491331IPR010409GAGA-binding transcriptional activator
PfamPF062175.1E-961331IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDNVGHREDG RQRQDSYKAL HTQWMMPQRQ MKDHHSMNLL ALMSERDNAI MERDHALAEK  60
KAAMAERDMA FAQRDSAMAE RNAAIVERDN ALAALELART NGFNMNNGNG FNPGSLNGAK  120
NFHHHDQQPH AQSLPLQLAD APYDHAREMH ISDAYPISTA PVSAAGKAKK PKKNSSQGSP  180
LKRPSGVLRK TKKAAGDWRD VGISGGGEDP AHVASVMKNE WKDQDLGLNQ VSFDESSMPA  240
PACSCTGVLR QCYKWGNGGW QSSCCTMSMS LYPLPVMPNK RHARMGGRKM SGSAFTKLLS  300
RLAAEGHDLS ASVDLKDHWA KHGTNRYITI R
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_15776.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3748700.0AK374870.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3078K14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158993.10.0barley B recombinant-like protein D
RefseqXP_020158994.10.0barley B recombinant-like protein D
SwissprotQ5VSA80.0BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLF2EFE40.0F2EFE4_HORVV; Predicted protein
STRINGMLOC_15776.40.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.12e-98basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]