PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_15746.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NAC

Protein Properties

Length: 339aa MW: 38780.6 Da PI: 7.1013

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_15746.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.9	2.3e-54	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +ppGfrFhPtdeelv++yL+kkv+ k+++l ++ik+vd+yk+ePwdL++ k+ + ++++w+fFs++dkky+tg+r+nrat++g+Wkatg+dk++++ MLOC_15746.1 7 VPPGFRFHPTDEELVDYYLRKKVQLKRIDL-DIIKDVDLYKIEPWDLQErcKIGTeDQNDWFFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPIYV 102 69**************************.99**********953444442455********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 k+ lvg++ktLvfykgrap+g+k dW+mheyrle MLOC_15746.1 103 -KHCLVGMRKTLVFYKGRAPNGQKLDWIMHEYRLE 136 .899***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.23E-59	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.586	7	156	IPR003441	NAC domain
Pfam	PF02365	9.9E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MNAFSHVPPG FRFHPTDEEL VDYYLRKKVQ LKRIDLDIIK DVDLYKIEPW DLQERCKIGT 60 EDQNDWFFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YVKHCLVGMR KTLVFYKGRA 120 PNGQKLDWIM HEYRLETNEN GAPHDEGWVV CKVFKKRVAT VQRMATTDSP FWFNHEHVAF 180 MAPHIDSPRQ AVHHLQNAAY HHGHHQTYHH PCKVELEYHH LLPQEPASFL QLPQLEIPRL 240 PDLIGAVAAS LQPCNQTHDG QASRQLEIEP IYVTDASAGE WRDLDKFMAS QLSHGGATPK 300 ESSGYANPAL AFQAEGNREE ALDYVSASAS SGGDNGLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-48	6	157	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_15746.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ693423	0.0	JQ693423.1 Brachypodium distachyon SWN2 (SWN2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167162.1	0.0	NAC domain-containing protein 7-like
Refseq	XP_020167163.1	0.0	NAC domain-containing protein 7-like
Refseq	XP_020167164.1	0.0	NAC domain-containing protein 7-like
Refseq	XP_020167165.1	0.0	NAC domain-containing protein 7-like
Refseq	XP_020167167.1	0.0	NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-119	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	M0UYR1	0.0	M0UYR1_HORVV; Uncharacterized protein
STRING	MLOC_15746.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2370	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-112	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]