PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_15725.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 180aa    MW: 20507.8 Da    PI: 4.407
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_15725.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.92.4e-106584294
                  TS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
            B3 42 sgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                  + ++W++k++y  +++s++yvl+ ++ ++v+ ++L++gDf++++ d++ + ++v+
  MLOC_15725.6  6 NAQEWTFKYRYwpNNNSRMYVLE-NTGDYVRTHNLRVGDFIMIYKDDD-NNRFVI 58
                  5689*******89999999***9.********************5554.333344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.418164IPR003340B3 DNA binding domain
CDDcd100175.57E-14662No hitNo description
Gene3DG3DSA:2.40.330.107.9E-13663IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-7758IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-10758IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MHDLLNAQEW TFKYRYWPNN NSRMYVLENT GDYVRTHNLR VGDFIMIYKD DDNNRFVIRA  60
KKAGDDLVAA MPQFHEHISG ILPIPEVDDY VSLIPSPADI SAFIPQADEN YEIFDGIFNS  120
LPEIPVANVR YSDFFDPFSD CMDASNPSLN GNNSANLASH FHDERTGLSL FPNPKSGPLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A8e-2516644109B3 domain-containing transcription factor FUS3
6j9b_D8e-2516644109B3 domain-containing transcription factor FUS3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_15725.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3751420.0AK375142.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3086F07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179453.11e-122B3 domain-containing protein LFL1-like
SwissprotA4LBC01e-83LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBLA0A287LGA51e-131A0A287LGA5_HORVV; Uncharacterized protein
STRINGMLOC_15725.31e-131(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.14e-25B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang J, et al.
    OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
    Plant J., 2013. 73(4): p. 566-78
    [PMID:23083333]
  3. Guo X, et al.
    The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
    Plant J., 2013. 75(3): p. 403-16
    [PMID:23581288]
  4. Matsuno K,Fujimura T
    Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?
    Mol. Genet. Genomics, 2015. 290(4): p. 1551-62
    [PMID:25732383]