PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_15725.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 58aa MW: 7192.01 Da PI: 6.5121 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.8 | 3e-11 | 6 | 54 | 42 | 88 |
TS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 42 sgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 + ++W++k++y +++s++yvl+ ++ ++v+ ++L++gDf++++ d++ + MLOC_15725.5 6 NAQEWTFKYRYwpNNNSRMYVLE-NTGDYVRTHNLRVGDFIMIYKDDDnN 54 5689*******89999999***9.*******************9655423 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.559 | 1 | 58 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-13 | 6 | 57 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.01E-13 | 6 | 57 | No hit | No description |
Pfam | PF02362 | 2.3E-8 | 7 | 54 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-11 | 7 | 57 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010116 | Biological Process | positive regulation of abscisic acid biosynthetic process | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0010373 | Biological Process | negative regulation of gibberellin biosynthetic process | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 58 aa Download sequence Send to blast |
MHDLLNAQEW TFKYRYWPNN NSRMYVLENT GDYVRTHNLR VGDFIMIYKD DDNNRFVT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 5e-22 | 1 | 57 | 44 | 100 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 5e-22 | 1 | 57 | 44 | 100 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00382 | DAP | Transfer from AT3G26790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_15725.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375142 | 5e-90 | AK375142.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3086F07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179453.1 | 1e-34 | B3 domain-containing protein LFL1-like | ||||
Swissprot | A4LBC0 | 9e-32 | LFL1_ORYSJ; B3 domain-containing protein LFL1 | ||||
TrEMBL | A0A287LG97 | 2e-37 | A0A287LG97_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287LGA0 | 2e-37 | A0A287LGA0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_15725.3 | 2e-36 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26790.1 | 1e-22 | B3 family protein |
Publications ? help Back to Top | |||
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