PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_15510.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 441aa    MW: 48234 Da    PI: 8.0205
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_15510.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.72.5e-16741135
          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                  C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  MLOC_15510.1  7 CRHCGVTSTPLWRNGPLNKPVLCNACGSRWRTKGS 41
                  ****************77777***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.0E-9153IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-12446No hitNo description
CDDcd002022.13E-15660No hitNo description
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
PfamPF003204.4E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MGKEGPCRHC GVTSTPLWRN GPLNKPVLCN ACGSRWRTKG SLENYTPMHS RDDIDAEQPR  60
VSKLKPPTLR LKEQRQVKKK PSHSIRENGA FSDQNFWKMG DADPSRSSSG SALSYSESCA  120
PYGSADVSEM TGSAQSHAWE SLVPSKKRSY VTRTKSSSVD MLVKDLHCIM HEEQLSYLSG  180
SSEEDLIYHN ATPVGSFEIG YGSMLLRSSN SKSAEEDSEA NSVPADNKSY LTSESYSGTA  240
SFVVHSESKG ASNSNAAPEK PKWFPVQTHE NVKRGKLHYS KQHTLENVGS ALVSVALEGE  300
DTKETGGNEN TSALKDLTKS NMKPLKRPHE SQLQSCPEGT MRIAKKVCKS VTMAPQFKGS  360
FLPKSGGAPF NLLMLPPDKI SMLAPPQYMD NSDQDLLLEV PLNARQPEAE LLYQPFQLSS  420
VARSSTSADV VADGEGRLKQ P
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_15510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3625810.0AK362581.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2008F08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173115.10.0GATA transcription factor 26-like isoform X1
TrEMBLF2DFB40.0F2DFB4_HORVV; Predicted protein
STRINGMLOC_15510.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.34e-58GATA transcription factor 26