PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_14983.8
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 803aa    MW: 84705.4 Da    PI: 4.4173
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_14983.8genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064663688123
                   EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                   ++C   +C+++F+ +++L  H ++ +
  MLOC_14983.8 663 FECDidYCHMTFKKRDELSLHKKNmC 688
                   89*******************99866 PP
2zf-C2H212.70.00038688710323
                   ET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                   C+   Cgk+F+++ +L+rH++ H
  MLOC_14983.8 688 CTikSCGKHFRSHKYLRRHQSIH 710
                   77779***************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035529663685IPR015880Zinc finger, C2H2-like
SMARTSM003550.46686710IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.235686715IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-7687710IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280688710IPR007087Zinc finger, C2H2
SuperFamilySSF576679.35E-12702744No hitNo description
Gene3DG3DSA:3.30.160.603.1E-13711738IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.817716745IPR007087Zinc finger, C2H2
SMARTSM003550.0015716740IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280718740IPR007087Zinc finger, C2H2
SuperFamilySSF576672.08E-8733769No hitNo description
Gene3DG3DSA:3.30.160.604.3E-10739768IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035527746768IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MIPAQECEVG HDHSASKGSA RRPEGKEQTT LVSKAAAEPV VMEGALVADE AAAEQEVGVA  60
TPLVDGSYTE PEVTGGASLV SGLITETQVI NGVCLADEAV AERVSLVSGS IDEPEVISGA  120
ALANVAVAET EVSAGLCFVS EAAIEAADVA TTSGVTTGAP LDNKGVADPD TEMGAPTIHE  180
SASKAASEAA DVAIVSEVTT GAPLDNKGVT EPDIKMGASP VDESASEAAT EAAYVVTSPE  240
VTTGAPLDNQ RVAEPDIKMG ASPVNECAAK TATEAADVVT NLRVTTVASF VNRGVVEPNI  300
KMEASPAKES AAEMDFVHPG FLVTEAATHP GLPERVSLAN EAVAEREVSE AGSLVSEPAA  360
EAAGVVTVLE VTTGTPLDSE GTAEPETKIG PSFANESTAE MDSVLLGSLV TEATTHPGLI  420
GRVSLVTETG VTGAANLDTE VSMEPEDTGR PSLINESTEL EITRGVSIAT DAATEPEVTR  480
RASARSGDSD AALNEPDTLD CDLDSVSVQI ENAGESVATE VQPSRDDGGD VVGSVNAMST  540
CPVTDKGPAF DEATPQDDAP SVSCVSGLVV RSVGKSGRTD VICYARRRGK RKLDMEETTT  600
DQLEMGDGDI YGQCEEKATF DITVPYESAM STAGSADIKL ADIKRGLVDN SASSKGKKRK  660
GRFECDIDYC HMTFKKRDEL SLHKKNMCTI KSCGKHFRSH KYLRRHQSIH NEERPYKCPW  720
EGCGMAFKWT WALADHFEVH TGEKPYKCRT PGCSKIYKYV SDFTRHRRRC KPQSKIQDRL  780
FILLSYPPIL SHMKLSSWMC NKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A6e-4366376923129Lysine-specific demethylase REF6
6a58_A6e-4366376923129Lysine-specific demethylase REF6
6a59_A6e-4366376923129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1585591RRRGKRK
2585592RRRGKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_14983.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197868.10.0uncharacterized protein LOC109783681 isoform X1
TrEMBLA0A446RG110.0A0A446RG11_TRITD; Uncharacterized protein
STRINGMLOC_14983.80.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.16e-39relative of early flowering 6