PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_14983.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 521aa    MW: 55672 Da    PI: 4.6129
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_14983.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039406431123
                   EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                   ++C   +C+++F+ +++L  H ++ +
  MLOC_14983.6 406 FECDidYCHMTFKKRDELSLHKKNmC 431
                   89*******************99866 PP
2zf-C2H213.40.00023431453323
                   ET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                   C+   Cgk+F+++ +L+rH++ H
  MLOC_14983.6 431 CTikSCGKHFRSHKYLRRHQSIH 453
                   77779***************999 PP
3zf-C2H211.10.0012489513123
                   EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                   ykC    C+k ++  s+++rH r++
  MLOC_14983.6 489 YKCRtpGCSKIYKYVSDFTRHRRRC 513
                   99*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035529406428IPR015880Zinc finger, C2H2-like
SMARTSM003550.46429453IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.235429458IPR007087Zinc finger, C2H2
PROSITE patternPS000280431453IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-7434459IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.49E-12445487No hitNo description
PROSITE profilePS5015713.817459488IPR007087Zinc finger, C2H2
SMARTSM003550.0015459483IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.7E-13460482IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280461483IPR007087Zinc finger, C2H2
SuperFamilySSF576671.22E-8475512No hitNo description
Gene3DG3DSA:3.30.160.602.3E-10483511IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035527489511IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MEGALVADEA AAEQEVGVAT PLVDGSYTEP EVTGGASLVS GLITETQVIN GVCLADEAVA  60
ERVSLVSGSI DEPEVISGAA LANVAVAETE VSAGLCFVSE AAIEAADVAT TSGVTTGAPL  120
DNKGTAEPET KIGPSFANES TAEMDSVLLG SLVTEATTHP GLIGRVSLVT ETGVTGAANL  180
DTEVSMEPED TGRPSLINES TELEITRGVS IATDAATEPE VTRRASARSG DSDAALNEPD  240
TLDCDLDSVS VQIENAGESV ATEVQPSRDD GGDVVGSVNA MSTCPVTDKG PAFDEATPQD  300
DAPSVSCVSG LVVRSVGKSG RTDVICYARR RGKRKLDMEE TTTDQLEMGD GDIYGQCEEK  360
ATFDITVPYE SAMSTAGSAD IKLADIKRGL VDNSASSKGK KRKGRFECDI DYCHMTFKKR  420
DELSLHKKNM CTIKSCGKHF RSHKYLRRHQ SIHNEERPYK CPWEGCGMAF KWTWALADHF  480
EVHTGEKPYK CRTPGCSKIY KYVSDFTRHR RRCKPQRRKT T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A2e-4340652023137Lysine-specific demethylase REF6
6a58_A2e-4340652023137Lysine-specific demethylase REF6
6a59_A2e-4340652023137Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328334RRRGKRK
2328335RRRGKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_14983.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197870.10.0uncharacterized protein LOC109783681 isoform X3
TrEMBLA0A446RFY20.0A0A446RFY2_TRITD; Uncharacterized protein
STRINGMLOC_14983.80.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.13e-37relative of early flowering 6