PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_14920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 137aa MW: 14958 Da PI: 10.5485 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+sFs+ L H +H MLOC_14920.1 44 FVCKTCGRSFSSFQALGGHRTSH 66 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00028 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F L H+r+H MLOC_14920.1 95 HRCHVCGLEFEMGQALGGHMRRH 117 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 5.9E-11 | 44 | 68 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.824 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.5E-7 | 44 | 117 | No hit | No description |
SMART | SM00355 | 0.1 | 44 | 66 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.3E-11 | 94 | 120 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.66 | 95 | 122 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.28 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MVSSMKQYRD DADAPSSVSL SLSLGAVADR ISKKMRRGGA DGEFVCKTCG RSFSSFQALG 60 GHRTSHLRGR HGLALGLAAG SEQVSRKSRD QKQVHRCHVC GLEFEMGQAL GGHMRRHREQ 120 EATTTAQAQP VLLQLFF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_14920.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198416.1 | 1e-67 | zinc finger protein ZAT8-like | ||||
Swissprot | Q9LX85 | 9e-20 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | M0UW60 | 4e-94 | M0UW60_HORVV; Uncharacterized protein | ||||
STRING | MLOC_14920.1 | 7e-95 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 2e-20 | C2H2 family protein |