PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_14639.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | SRS | ||||||||
Protein Properties | Length: 247aa MW: 25035 Da PI: 8.2211 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 231 | 2e-71 | 11 | 172 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 +sgt++CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rrerq+ +a s+ a+++++a sk++r l+s++q+++s+t++s+a++++ MLOC_14639.1 11 GSGTTTCQDCGNQAKKDCTHSRCRTCCKSRGFDCSTHVKSTWVPAARRRERQHLGGSA-SSPANASTAAGSKKPRLLSSQQQATTSHTSTSNATTPR 106 57999*********************************************97766665.66667789999*************************** PP DUF702 99 eletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + +t+s lP++v+++avfrcvrv+s+ddge+e+aYq++v+i+GhvfkG+LydqG+++ MLOC_14639.1 107 SYDTTSshqdasfrgnLPRQVRAPAVFRCVRVTSIDDGEDEYAYQATVTINGHVFKGFLYDQGVDD 172 **999999*******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.4E-63 | 14 | 171 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.0E-27 | 16 | 58 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.1E-29 | 123 | 170 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MLDGGGDGSS GSGTTTCQDC GNQAKKDCTH SRCRTCCKSR GFDCSTHVKS TWVPAARRRE 60 RQHLGGSASS PANASTAAGS KKPRLLSSQQ QATTSHTSTS NATTPRSYDT TSSHQDASFR 120 GNLPRQVRAP AVFRCVRVTS IDDGEDEYAY QATVTINGHV FKGFLYDQGV DDGRASNDID 180 PSTGGAVPNM SELHLGGGGG NAARGGGGSS SMAPSDMYGG GGAGGAGGGG GGQHILGGGS 240 SYGNTMN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_14639.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355643 | 0.0 | AK355643.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1023M22. | |||
GenBank | AK363554 | 0.0 | AK363554.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016K14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182901.1 | 1e-132 | protein LATERAL ROOT PRIMORDIUM 1-like | ||||
Swissprot | Q94CK9 | 2e-65 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A287MMI0 | 1e-177 | A0A287MMI0_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287MMI4 | 1e-177 | A0A287MMI4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_14639.1 | 1e-179 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3579 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 2e-51 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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