PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_14596.7
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 184aa    MW: 19278.4 Da    PI: 8.5126
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_14596.7genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.35.2e-11135176546
                   CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                   k +rr+++NReAAr+sR RKka++ +Le+   +L+   ++L+
  MLOC_14596.7 135 KTARRLAQNREAARKSRIRKKAYLSQLETSRSKLTHLEQELQ 176
                   889**************************9999998887554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.4E-9128181No hitNo description
SMARTSM003388.8E-5131184IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.507133184IPR004827Basic-leucine zipper domain
PfamPF001701.7E-7135177IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-7135181No hitNo description
PROSITE patternPS000360138153IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MNAFGWPCDC EGPNPSSKSS SNVTVANFPS LASPHGVVGT LGMAAPGMAL AAAEADRFCL  60
PRAAAQQFEN WGDSVSGIVV SSPLTETSTD LGDSGEKHHA LMGCGGGAGT GAGGGAHSQR  120
RVGCVDSSER TGDEKTARRL AQNREAARKS RIRKKAYLSQ LETSRSKLTH LEQELQRARQ  180
QVNP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_14596.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155511.12e-78transcription factor TGAL3-like
SwissprotQ5Z6N91e-31TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLM0UV591e-133M0UV59_HORVV; Uncharacterized protein
STRINGMLOC_14596.31e-115(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.56e-21TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]