PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_14511.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

C2H2

Protein Properties

Length: 313aa MW: 33754.2 Da PI: 8.5007

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_14511.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	26	48	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H MLOC_14511.1 26 FVCEICHKGFQRDQNLQLHRRGH 48 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.74E-6	25	48	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.2E-5	25	48	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.637	26	48	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	28	48	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.74E-6	100	125	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MHLVHADPSA EVIALSPRTL MATNRFVCEI CHKGFQRDQN LQLHRRGHNL PWKLRQRGAE 60 GGAPPRKRAY VCPEPACVHH DPRRALGDLT GIKKHFCRKH GEKKWKCDRC AKRYAVHSDW 120 KAHAKVCGTR EYRCDCGTLF SRRDSFVTHR AFCDALAQEN SKLAQPAMNM ATVASALQGQ 180 QHAHSHHLML PSTHADDLDM DADEASAFEQ PDIKSPHLKM FSDYDADAAA ADNPLGCMLS 240 SLGATTPSAF SPSSRLGMLG LQAGPSDAGA MGGGCYSPGN GSLASMSATA LLQKAAQMGA 300 TTSSGYGGGS FTP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-33	101	169	3	71	Zinc finger protein JACKDAW
5b3h_F	2e-33	101	169	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_14511.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070390	1e-171	AK070390.1 Oryza sativa Japonica Group cDNA clone:J023050E05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196182.1	0.0	protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	7e-97	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A3B6G033	0.0	A0A3B6G033_WHEAT; Uncharacterized protein
STRING	MLOC_14511.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-98	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]