PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_14363.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 269aa    MW: 29490.9 Da    PI: 10.124
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_14363.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.5e-065678123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C++C+k F r  nL+ H r H
  MLOC_14363.2 56 FVCEICNKGFQRDQNLQLHRRGH 78
                  89*******************88 PP

2zf-C2H2157.2e-05132154123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kC++C+k +  +s+ k H +t+
  MLOC_14363.2 132 WKCEKCSKKYAVQSDWKAHTKTC 154
                   58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.06E-75578No hitNo description
Gene3DG3DSA:3.30.160.607.5E-65578IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121713.7E-55678IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0175678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9495678IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
SMARTSM0035523097127IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4120153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.06E-7127152No hitNo description
SMARTSM00355130132152IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEVDTSSAAA RPGGAQPQLP PPGPPAKKKR ALPGMPDPDA EVIALSPKTL MATNRFVCEI  60
CNKGFQRDQN LQLHRRGHNL PWKLRQRSGK EVRKRVYVCP EPSCVHHDAS RALGDLTGIK  120
KHFCRKHGEK KWKCEKCSKK YAVQSDWKAH TKTCGSREYR CDCGTLFSRR DSFITHRAFC  180
DALAEESAKA RAPPAEDASS GAAGPLALPP LQAPLPAAPA PLQQLPPAPA PQQHEEQGKD  240
GQRTTVRPSI LAALAQVRSN LTVPWVLPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-36128189364Zinc finger protein JACKDAW
5b3h_F4e-36128189364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_14363.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3759900.0AK375990.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3111P12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152675.11e-129protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-114IDD1_ARATH; Zinc finger protein ENHYDROUS
SwissprotQ9SCQ61e-114IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A287PK621e-171A0A287PK62_HORVV; Uncharacterized protein
STRINGMLOC_14363.11e-174(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.15e-97C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]