PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_14305.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family LFY
Protein Properties Length: 138aa    MW: 15160.4 Da    PI: 10.7511
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_14305.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY190.41.3e-587138177303
       FLO_LFY 177 ee.kkseeekkkaskkkqkrkkkkelkse....ededeee....eededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLl 264
                    + +k+ +  +ka  kk++rkk ++l+      e  +e+     +e+++++ +g  g erqrehPf+vtepgevar+kknGLDYLf+Lye+Cr  Ll
  MLOC_14305.3   7 GKkQKNGSAGRKA--KKARRKKVNDLRLGmqgdE--HEDGggglSESTESSAGGGVGGERQREHPFVVTEPGEVARAKKNGLDYLFHLYEECRVLLL 99 
                   2212233333333..3444455444444343331..2222112144555556778889*************************************** PP

       FLO_LFY 265 qvqkiakerGekcPtkvtnqvfryakkagasyinkPkmr 303
                   qvq++ak +G+k+Ptkvtnqvfrya k+gasyinkPkmr
  MLOC_14305.3 100 QVQSMAKLHGQKAPTKVTNQVFRYASKVGASYINKPKMR 138
                   **************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016984.6E-616138IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MRMMASGKKQ KNGSAGRKAK KARRKKVNDL RLGMQGDEHE DGGGGLSEST ESSAGGGVGG  60
ERQREHPFVV TEPGEVARAK KNGLDYLFHL YEECRVLLLQ VQSMAKLHGQ KAPTKVTNQV  120
FRYASKVGAS YINKPKMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A6e-4458138181PROTEIN LEAFY
2vy2_A6e-4458138181PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Together with APO1, involved in the temporal regulation of meristem size and identity during both vegetative and reproductive developments through interaction with APO1 (PubMed:21910771). Promotes flowering (PubMed:21910771). {ECO:0000250|UniProtKB:Q00958, ECO:0000269|PubMed:21910771}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_14305.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2318880.0AB231888.1 Triticum aestivum WFLa mRNA for FLORICAULA/LEAFY-like protein, complete cds.
GenBankAB2318900.0AB231890.1 Triticum aestivum WFLd mRNA for FLORICAULA/LFAFY-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152169.13e-70probable transcription factor FL
SwissprotA2XX392e-60FL_ORYSI; Probable transcription factor FL
SwissprotQ0JAI12e-60FL_ORYSJ; Probable transcription factor FL
TrEMBLA0A287J8D94e-95A0A287J8D9_HORVV; Uncharacterized protein
STRINGMLOC_14305.12e-94(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.12e-42floral meristem identity control protein LEAFY (LFY)