PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_14118.2 | ||||||||
Common Name | CCA1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 717aa MW: 77740.4 Da PI: 6.8173 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.2e-15 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+ E++++++a k++G W +I +++g ++t+ q++s+ qk+ MLOC_14118.2 24 RERWTEAEHKRFLEALKLYGRA-WQRIEEHVG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.84E-16 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.147 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.6E-16 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.5E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-12 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-8 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 717 aa Download sequence Send to blast |
MEINSSGEET VIKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRAWQRIE EHVGTKTAVQ 60 IRSHAQKFFT KLEKEAINNG TSPGQAHDID IPPPRPKRKP NCPYPRKGCL SSETPTREVP 120 KSSVSLSNSN SQMESNGTLQ VTSTQKLQRK ELSGNGSCSE VINIFREAPS ASFSSSNKSS 180 SNHGVSGGIE PTKTEIKDMA AMERKSTSVD VAKDVKDIND QEMERNNRVH ISSKYDRSHE 240 DCLDSSMKHM QLKPNTVETT YTGQHVASAP LYQMNKTGAT GTPDPGTEGS HPDQTNDQVG 300 GANGSMDCIH PTLPVDLKFG SSSTAQPFPH NYSGFAPTMQ CQCNQDAYRS SVDMSSTFSN 360 MLVSTLLSNP TVHAAARLAA SYWPAADSNI PVDPNQGIFA QNAQGRHIVS PPSMASVVAA 420 TVAAASAWWA TQGLLPLFAP PMAFPFVPVP TASFPTADVQ RATENCPVDN APKECQVAQG 480 QGQPEAMIVV ASSGSGESGK GEVCPHTELN ISLADKAETT PATGAETSDA LGNKKKQDRS 540 SCGSNTPSSS DVEAEHVPEN QDQANDKTQQ ACCSNSSAGD MNHRRFRNIS STNDSWKEVS 600 EEGRMAFDKL FSRGKLPQSF SPPQAEGLKV VPRGEQDEAT TVTVDLNKSA AVMDHELDTL 660 VGPRASFPIE LSHLNMKSRR TGFKPYKRCS VEAKENRVPA ADEVGTKRIR LDSEPST |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00654 | PBM | Transfer from LOC_Os08g06110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_14118.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360966 | 0.0 | AK360966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129K17. | |||
GenBank | JN603242 | 0.0 | JN603242.1 Hordeum vulgare circadian clock associated 1 (CCA1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195458.1 | 0.0 | protein LHY | ||||
Refseq | XP_020195459.1 | 0.0 | protein LHY | ||||
Refseq | XP_020195460.1 | 0.0 | protein LHY | ||||
Refseq | XP_020195461.1 | 0.0 | protein LHY | ||||
TrEMBL | F2DAQ2 | 0.0 | F2DAQ2_HORVV; Circadian clock associated 1 | ||||
TrEMBL | J7FJ38 | 0.0 | J7FJ38_HORVU; Circadian clock associated 1 | ||||
STRING | MLOC_14118.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6031 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46830.1 | 1e-40 | circadian clock associated 1 |
Publications ? help Back to Top | |||
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