PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_138.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

G2-like

Protein Properties

Length: 215aa MW: 23516.7 Da PI: 11.1311

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_138.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.3	1.5e-32	150	203	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ MLOC_138.1 150 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 203 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.45E-16	147	204	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.0E-29	148	204	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.7E-24	150	204	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-7	151	202	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MELFPRQPDL ALQISTTSSS SSPPAAPPGS WGRPPDAATG AGTMDHFGHH LGFLRADNAG 60 KDGTPPSPWT PPPPSAAGYS NHISNHYHHR MNALLKPIRG VPIYHHHPSF QQLQHQHMAM 120 AYRSSGVSGG GGFLSSRSRF PPGRRSVRAP RMRWTTTLHA RFVHAVELLG GHERATPKSV 180 LELMDVKDLT LAHVKSHLQM YRTIKSTDKP MTSPG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-17	151	203	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-17	151	203	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-17	151	203	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-17	151	203	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-17	151	203	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-17	151	203	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-17	151	203	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-17	151	203	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_138.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP101668	1e-47	FP101668.1 Phyllostachys edulis cDNA clone: bphyst006o10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020157570.1	1e-129	probable transcription factor KAN2 isoform X1
Refseq	XP_020157571.1	1e-129	probable transcription factor KAN2 isoform X2
TrEMBL	A0A287T3N0	1e-155	A0A287T3N0_HORVV; Uncharacterized protein
TrEMBL	A0A287T3P2	1e-155	A0A287T3P2_HORVV; Uncharacterized protein
STRING	MLOC_138.2	1e-155	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17695.1	1e-37	G2-like family protein