PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_13610.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Nin-like

Protein Properties

Length: 612aa MW: 67370 Da PI: 6.8814

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_13610.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.5	1.6e-29	258	308	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ MLOC_13610.2 258 EKNVSLKVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 308 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.041	247	328	IPR003035	RWP-RK domain
Pfam	PF02042	7.1E-26	260	308	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.6E-22	508	597	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.9E-21	512	593	No hit	No description
PROSITE profile	PS51745	23.382	514	596	IPR000270	PB1 domain
SMART	SM00666	2.4E-19	514	596	IPR000270	PB1 domain
Pfam	PF00564	2.1E-16	515	595	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence Send to blast
MLPLALAWIP VCPNSNLNVS AEYGDQAIKF GLRNKDVLCV QESACYINDM RMHDFLRACA 60 EHPLEKGQGV PGNAILSNNP FFSPDVREYD MHNYPLAHHA RKFGLHAAVA IRLRSAYTGN 120 DDYVLEFFLP LTCKVREEQQ LLLDDISMTM QRVCSSLRTV SDAELKESII TMPSGIRCSS 180 SDVSISSCDQ IDVSSEVNIN VPLENQISNS VERLANTKYA KFEPGTTSEN FENCSSTGKN 240 VSLTESTSDG LKIRSSTEKN VSLKVLQQYF AGSLKDAAKS IGVCPTTLKR ICRQHGISRW 300 PSRKIKKVNR SLQKIQNVIS TVHGVEGVIK YDPATGCIVS SVSHTEEPSM MNAEHRSSDS 360 LPTECHKFQP DYDAYQREHL GQAVPHKAQN EKRSGTHINL NPGGLSRNSH FGRTSKGPLC 420 QDASNGSYLR KEMICADGMD MWVEGAEQNN VLGNSISMPQ QCKIEIETDK SNTIVEQSLA 480 SSSSMTDCSS GGTSSDGTLK KCFKSRSVDG SNASIVVKAA YKDDTVRLKL LTSMKYENLL 540 EEIAKRLKLS VGTFQLKYKD DEDEWVILAS DADLQECLDV LDTTGSRIVK IQVRDVPCAT 600 RAASGSSSIS GR

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence Send to blast

MLPLALAWIP VCPNSNLNVS AEYGDQAIKF GLRNKDVLCV QESACYINDM RMHDFLRACA  60
EHPLEKGQGV PGNAILSNNP FFSPDVREYD MHNYPLAHHA RKFGLHAAVA IRLRSAYTGN  120
DDYVLEFFLP LTCKVREEQQ LLLDDISMTM QRVCSSLRTV SDAELKESII TMPSGIRCSS  180
SDVSISSCDQ IDVSSEVNIN VPLENQISNS VERLANTKYA KFEPGTTSEN FENCSSTGKN  240
VSLTESTSDG LKIRSSTEKN VSLKVLQQYF AGSLKDAAKS IGVCPTTLKR ICRQHGISRW  300
PSRKIKKVNR SLQKIQNVIS TVHGVEGVIK YDPATGCIVS SVSHTEEPSM MNAEHRSSDS  360
LPTECHKFQP DYDAYQREHL GQAVPHKAQN EKRSGTHINL NPGGLSRNSH FGRTSKGPLC  420
QDASNGSYLR KEMICADGMD MWVEGAEQNN VLGNSISMPQ QCKIEIETDK SNTIVEQSLA  480
SSSSMTDCSS GGTSSDGTLK KCFKSRSVDG SNASIVVKAA YKDDTVRLKL LTSMKYENLL  540
EEIAKRLKLS VGTFQLKYKD DEDEWVILAS DADLQECLDV LDTTGSRIVK IQVRDVPCAT  600
RAASGSSSIS GR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_13610.2

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249277	0.0	AK249277.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf33g13, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020152944.1	0.0	protein NLP2-like
TrEMBL	M0URZ2	0.0	M0URZ2_HORVV; Uncharacterized protein
STRING	MLOC_13610.1	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	1e-118	Nin-like family protein