PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_13610.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Nin-like

Protein Properties

Length: 909aa MW: 99219.8 Da PI: 5.4619

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_13610.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.6e-29	555	605	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ MLOC_13610.1 555 EKNVSLKVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 605 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.041	544	625	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-25	557	605	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.21E-22	805	894	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.3E-21	809	890	No hit	No description
SMART	SM00666	2.4E-19	811	893	IPR000270	PB1 domain
PROSITE profile	PS51745	23.382	811	893	IPR000270	PB1 domain
Pfam	PF00564	3.6E-16	812	892	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 909 aa Download sequence Send to blast
MDEIGTPDYS DGGSDMDLLM LSGFDGLDSF PELGTGPSFS DGILSSFSVS PAQPVTYISP 60 SPPSVAAEEQ GDVSITDGSD CSVSLASNEV MNVSAPTVPK TVYGGVSLTE RMLRALAMLK 120 EASTGGPVLV QVWIPVRNGD HQVLTTSDQP FLLDERLTGY REVSRQFTFS ATEGPGLFPG 180 LPGRVFISGM PEWTSNVMYY NTSEFLRVDY AIRNEVRGSL AMPVFNSSGG SCCAVLEVVM 240 TQEKDNFCSE MDNLSNALQC VHLSTVQART HPQSLTKNQQ SVLTEISGVL KAVCHTHMLP 300 LALAWIPVCP NSNLNVSAEY GDQAIKFGLR NKDVLCVQES ACYINDMRMH DFLRACAEHP 360 LEKGQGVPGN AILSNNPFFS PDVREYDMHN YPLAHHARKF GLHAAVAIRL RSAYTGNDDY 420 VLEFFLPLTC KVREEQQLLL DDISMTMQRV CSSLRTVSDA ELKESIITMP SGIRCSSSDV 480 SISSCDQIDV SSEVNINVPL ENQISNSVER LANTKYAKFE PGTTSENFEN CSSTGKNVSL 540 TESTSDGLKI RSSTEKNVSL KVLQQYFAGS LKDAAKSIGV CPTTLKRICR QHGISRWPSR 600 KIKKVNRSLQ KIQNVISTVH GVEGVIKYDP ATGCIVSSVS HTEEPSMMNA EHRSSDSLPT 660 ECHKFQPDYD AYQREHLGQA VPHKAQNEKR SGTHINLNPG GLSRNSHFGR TSKGPLCQDA 720 SNGSYLRKEM ICADGMDMWV EGAEQNNVLG NSISMPQQCK IEIETDKSNT IVEQSLASSS 780 SMTDCSSGGT SSDGTLKKCF KSRSVDGSNA SIVVKAAYKD DTVRLKLLTS MKYENLLEEI 840 AKRLKLSVGT FQLKYKDDED EWVILASDAD LQECLDVLDT TGSRIVKIQV RDVPCATRAA 900 SGSSSISGR

Sequence ? help Back to Top

Protein Sequence Length: 909 aa Download sequence Send to blast

MDEIGTPDYS DGGSDMDLLM LSGFDGLDSF PELGTGPSFS DGILSSFSVS PAQPVTYISP  60
SPPSVAAEEQ GDVSITDGSD CSVSLASNEV MNVSAPTVPK TVYGGVSLTE RMLRALAMLK  120
EASTGGPVLV QVWIPVRNGD HQVLTTSDQP FLLDERLTGY REVSRQFTFS ATEGPGLFPG  180
LPGRVFISGM PEWTSNVMYY NTSEFLRVDY AIRNEVRGSL AMPVFNSSGG SCCAVLEVVM  240
TQEKDNFCSE MDNLSNALQC VHLSTVQART HPQSLTKNQQ SVLTEISGVL KAVCHTHMLP  300
LALAWIPVCP NSNLNVSAEY GDQAIKFGLR NKDVLCVQES ACYINDMRMH DFLRACAEHP  360
LEKGQGVPGN AILSNNPFFS PDVREYDMHN YPLAHHARKF GLHAAVAIRL RSAYTGNDDY  420
VLEFFLPLTC KVREEQQLLL DDISMTMQRV CSSLRTVSDA ELKESIITMP SGIRCSSSDV  480
SISSCDQIDV SSEVNINVPL ENQISNSVER LANTKYAKFE PGTTSENFEN CSSTGKNVSL  540
TESTSDGLKI RSSTEKNVSL KVLQQYFAGS LKDAAKSIGV CPTTLKRICR QHGISRWPSR  600
KIKKVNRSLQ KIQNVISTVH GVEGVIKYDP ATGCIVSSVS HTEEPSMMNA EHRSSDSLPT  660
ECHKFQPDYD AYQREHLGQA VPHKAQNEKR SGTHINLNPG GLSRNSHFGR TSKGPLCQDA  720
SNGSYLRKEM ICADGMDMWV EGAEQNNVLG NSISMPQQCK IEIETDKSNT IVEQSLASSS  780
SMTDCSSGGT SSDGTLKKCF KSRSVDGSNA SIVVKAAYKD DTVRLKLLTS MKYENLLEEI  840
AKRLKLSVGT FQLKYKDDED EWVILASDAD LQECLDVLDT TGSRIVKIQV RDVPCATRAA  900
SGSSSISGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_13610.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249277	0.0	AK249277.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf33g13, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020152944.1	0.0	protein NLP2-like
TrEMBL	M0URZ1	0.0	M0URZ1_HORVV; Uncharacterized protein
STRING	MLOC_13610.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein