PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_13431.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 333aa    MW: 37357.4 Da    PI: 8.6787
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_13431.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.41.7e-094887544
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44
                  k  rr+++NReAAr+sR+RKk ++++Le    +L +  ++
  MLOC_13431.2 48 KTLRRLAQNREAARKSRLRKKSYVQQLESSKLKLAQLEQE 87
                  7889************************855444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-644107IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.3354690IPR004827Basic-leucine zipper domain
PfamPF001701.7E-64889IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.85E-74891No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-74993No hitNo description
PROSITE patternPS0003605166IPR004827Basic-leucine zipper domain
PfamPF141441.3E-33130205IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEMFNLNILF QPEQLESCPL EQGQSGGAIM ASNSSDRSDR SDKPLDQKTL RRLAQNREAA  60
RKSRLRKKSY VQQLESSKLK LAQLEQELQK ARQQGIFISS SGDQTHAMSG NGAMTFDLEY  120
TRWLEDQNKQ INELRTAVNA HASDSDLRLI VDGIMSHYDE IFKVKGVAAK ADVFHILSGM  180
WKTPAERCFL WLGGFRPSEL LKLLVNHLEP LTEQQMLGLT NLQQSSQQAE DALSQGMEAL  240
QQSLAETLAG SLGSSSGSSG NVANYMGQMA MAMGKLGTLE NFLRQADNLR QQTLHQMQRI  300
LTIRQASRAL LAIHDYFSRL RALSSLWLAR PRE
Functional Description ? help Back to Top
Source Description
UniProtPlays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269|PubMed:16045470, ECO:0000269|PubMed:22353606, ECO:0000269|PubMed:27176732}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_13431.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3639310.0AK363931.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020D02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189386.10.0transcription factor TGA2.1
RefseqXP_020189387.10.0transcription factor TGA2.1
SwissprotQ7X9930.0TGA21_ORYSJ; Transcription factor TGA2.1
TrEMBLA0A287H6S40.0A0A287H6S4_HORVV; Uncharacterized protein
STRINGMLOC_13431.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-139bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Chern M, et al.
    A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.
    Plant Methods, 2012. 8(1): p. 6
    [PMID:22353606]
  4. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]
  5. Chern M, et al.
    A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.
    PLoS Genet., 2016. 12(5): p. e1006049
    [PMID:27176732]