PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_13305.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | ERF | ||||||||
Protein Properties | Length: 263aa MW: 28730.5 Da PI: 9.4532 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 7.7e-19 | 46 | 93 | 4 | 55 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +G+r+++ +g+W+AeIrdp + +r++lg+f+ta++Aa+a++ a+++l+g MLOC_13305.2 46 HGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFDTADDAARAYDVAARRLRG 93 7******.**********72....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.5E-33 | 44 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.985 | 44 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-21 | 45 | 102 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.3E-10 | 45 | 56 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-31 | 46 | 102 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-12 | 46 | 93 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.83E-29 | 47 | 103 | No hit | No description |
PRINTS | PR00367 | 8.3E-10 | 67 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MKRTRFTAVG SWYHGRGRLM RFLFAAYDGG RAAHAASRKK RTGHLHGIRQ RPWGKWAAEI 60 RDPHKGTRVW LGTFDTADDA ARAYDVAARR LRGSKAKVNF PDAARTGARP RRASRRTAQK 120 PQCPPARTTA YSATAAARAQ PEQDAMMVKP ELMEFFNVDA IVHLTTAVAA LPPVTASTFA 180 DTMPRVDEDS SVGSGGGAML GFADELGFDP FMMFQLPCSD MYESADSIFA GDAVIPDALS 240 VDSGMDAVSL WSFDEFPMDS AIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-22 | 44 | 107 | 5 | 69 | ATERF1 |
3gcc_A | 9e-22 | 44 | 107 | 5 | 69 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_13305.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ102384 | 0.0 | DQ102384.2 Hordeum vulgare root abundant factor (RAF) gene, promoter region and complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175335.1 | 1e-115 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | M0UR09 | 0.0 | M0UR09_HORVV; Uncharacterized protein | ||||
STRING | MLOC_13305.1 | 1e-170 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 6e-19 | related to AP2 12 |