PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_13159.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 246aa MW: 26954 Da PI: 9.1388 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.5 | 5.7e-14 | 60 | 106 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++iN++f eL ++P + kK++K +iL A+ Y+k+Lq MLOC_13159.1 60 DHIMAERKRREKINQRFIELSAVIPGL-----KKMDKGTILADATTYVKELQ 106 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.066 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.81E-17 | 60 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-11 | 60 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-18 | 60 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.81E-15 | 61 | 110 | No hit | No description |
SMART | SM00353 | 1.7E-13 | 62 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MSSTGTSNTL SMSWNFGAVL PPQPVSSSGG GMIAARAPLG SAVSQPTRRT SKKSTPYAQD 60 HIMAERKRRE KINQRFIELS AVIPGLKKMD KGTILADATT YVKELQERVK YLEAAGGNHR 120 SVETVVLVTK PQCLVAPDNE ACPGSFLAAG TPARRELLPE IEAKFSEDNM MVRIHCEMNG 180 KGLVARVLAE VEELHLRIVH NDVMPFTAST VIITTMAKVE EGFTVKREEI VGRLNSVLYQ 240 HSSNNY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 47 | 53 | RRTSKKS |
2 | 64 | 69 | ERKRRE |
3 | 65 | 70 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_13159.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365995 | 1e-44 | AK365995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181335.1 | 1e-146 | transcription factor NAI1-like | ||||
TrEMBL | A0A287PSI8 | 0.0 | A0A287PSI8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_13159.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 5e-44 | bHLH family protein |