PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_13034.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 778aa MW: 88748.8 Da PI: 7.2575 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.1 | 1.1e-21 | 54 | 140 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ ++ i +++++Cskeg + +e + +++ +r+ trt+Cka+++ + +++g+w v++++ HnH+la MLOC_13034.5 54 LYCDYGHRIGFSVRKGKQSYFIGTRDIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMVRFRVDEKGRWTVIRFVPVHNHQLA 140 7********************9999****************99988..9999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-19 | 54 | 140 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.2E-32 | 262 | 355 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.087 | 543 | 579 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.8E-5 | 544 | 576 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 7.8E-6 | 554 | 581 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 778 aa Download sequence Send to blast |
MDIRQGSQEE LLRMRKNGEE GKKGEDHRNS LSRKEATEEL IGCTVHSEEE AYKLYCDYGH 60 RIGFSVRKGK QSYFIGTRDI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMVRFRV 120 DEKGRWTVIR FVPVHNHQLA KPGERHLLRS AKSFAVGKSG VIDPAESAES HAMNGSSDRT 180 VGDISEPPGY TTRDCYNRDN VQNITLIAAG DIQSLVSYFK RRTNEEGMFY WDVQVDQEGR 240 MTNFFFRDGK SRSDYDCFGD AVIFDTTYRT NKYSLICAPF VGVNHHWHNI VFGFAFLLDD 300 STASYVWLFK SFLESMGGRS PKSIFTDQDE AIMQAAEQVF PNTQHCFSYW HILKNAQSHL 360 GTVNTSQAFQ NMFMKCMQGC DIEMELQESW DAMLDEYKLQ DNDWLNGLYK FHNRWCSVFN 420 QDTFDGGINS SQWGEVSNNI LTGIADESTS LTRFALLLEK VVKTLRRNES EEDFRCSQTA 480 PVRAIKHSTV LKQAAESYTH RLYKLFEAEF LDGCGATSCH ESSCGGSLLR FEITMQGRGS 540 KMWTVLLDTS TMEISCGCRK FERMGLLCSH AMKAFSLQNV DMVPEKYILK RWTKDARRSM 600 YNPSQEDSTQ QECTEAELAY RNRAMQYAYN LVLKSQELEE ARKIFWDSLE TGEKALEVFF 660 EMRSLHAQSA KDASKGEKKK KKISKGPSAK KAKQALASSS APPVLIAQTT EQQFQPAQDP 720 HGNGTIGRSY YYQVFPSPMQ PNQIFMHPNT MPVCAPQQDL SAYAAVRPNS NFGGAKNI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_13034.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371105 | 0.0 | AK371105.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2125C10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195842.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9-like | ||||
TrEMBL | F2E4N1 | 0.0 | F2E4N1_HORVV; Predicted protein | ||||
STRING | MLOC_13034.8 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-99 | FAR1-related sequence 5 |