PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_13034.4

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 777aa MW: 88620.7 Da PI: 7.2575

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_13034.4	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.1	1.1e-21	54	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ ++ i +++++Cskeg + +e + +++ +r+ trt+Cka+++ + +++g+w v++++ HnH+la MLOC_13034.4 54 LYCDYGHRIGFSVRKGKQSYFIGTRDIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMVRFRVDEKGRWTVIRFVPVHNHQLA 140 7******************9999************99988..9999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-19	54	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.1E-32	262	355	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.087	543	579	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.8E-5	544	576	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.8E-6	554	581	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 777 aa Download sequence Send to blast
MDIRQGSQEE LLRMRKNGEE GKKGEDHRNS LSRKEATEEL IGCTVHSEEE AYKLYCDYGH 60 RIGFSVRKGK QSYFIGTRDI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMVRFRV 120 DEKGRWTVIR FVPVHNHQLA KPGERHLLRS AKSFAVGKSG VIDPAESAES HAMNGSSDRT 180 VGDISEPPGY TTRDCYNRDN VQNITLIAAG DIQSLVSYFK RRTNEEGMFY WDVQVDQEGR 240 MTNFFFRDGK SRSDYDCFGD AVIFDTTYRT NKYSLICAPF VGVNHHWHNI VFGFAFLLDD 300 STASYVWLFK SFLESMGGRS PKSIFTDQDE AIMQAAEQVF PNTQHCFSYW HILKNAQSHL 360 GTVNTSQAFQ NMFMKCMQGC DIEMELQESW DAMLDEYKLQ DNDWLNGLYK FHNRWCSVFN 420 QDTFDGGINS SQWGEVSNNI LTGIADESTS LTRFALLLEK VVKTLRRNES EEDFRCSQTA 480 PVRAIKHSTV LKQAAESYTH RLYKLFEAEF LDGCGATSCH ESSCGGSLLR FEITMQGRGS 540 KMWTVLLDTS TMEISCGCRK FERMGLLCSH AMKAFSLQNV DMVPEKYILK RWTKDARRSM 600 YNPSQEDSTQ QECTEAELAY RNRAMQYAYN LVLKSQELEE ARKIFWDSLE TGEKALEVFF 660 EMRSLHAQSA KDASKGEKKK KKISKGPSAK KAKQALASSS APPVLIAQTT EQQFQPAQDP 720 HGNGTIGRSY YYQVFPSPMQ PNQIFMHPNT MPVCAPQDLS AYAAVRPNSN FGGAKNI

Sequence ? help Back to Top

Protein Sequence Length: 777 aa Download sequence Send to blast

MDIRQGSQEE LLRMRKNGEE GKKGEDHRNS LSRKEATEEL IGCTVHSEEE AYKLYCDYGH  60
RIGFSVRKGK QSYFIGTRDI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMVRFRV  120
DEKGRWTVIR FVPVHNHQLA KPGERHLLRS AKSFAVGKSG VIDPAESAES HAMNGSSDRT  180
VGDISEPPGY TTRDCYNRDN VQNITLIAAG DIQSLVSYFK RRTNEEGMFY WDVQVDQEGR  240
MTNFFFRDGK SRSDYDCFGD AVIFDTTYRT NKYSLICAPF VGVNHHWHNI VFGFAFLLDD  300
STASYVWLFK SFLESMGGRS PKSIFTDQDE AIMQAAEQVF PNTQHCFSYW HILKNAQSHL  360
GTVNTSQAFQ NMFMKCMQGC DIEMELQESW DAMLDEYKLQ DNDWLNGLYK FHNRWCSVFN  420
QDTFDGGINS SQWGEVSNNI LTGIADESTS LTRFALLLEK VVKTLRRNES EEDFRCSQTA  480
PVRAIKHSTV LKQAAESYTH RLYKLFEAEF LDGCGATSCH ESSCGGSLLR FEITMQGRGS  540
KMWTVLLDTS TMEISCGCRK FERMGLLCSH AMKAFSLQNV DMVPEKYILK RWTKDARRSM  600
YNPSQEDSTQ QECTEAELAY RNRAMQYAYN LVLKSQELEE ARKIFWDSLE TGEKALEVFF  660
EMRSLHAQSA KDASKGEKKK KKISKGPSAK KAKQALASSS APPVLIAQTT EQQFQPAQDP  720
HGNGTIGRSY YYQVFPSPMQ PNQIFMHPNT MPVCAPQDLS AYAAVRPNSN FGGAKNI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_13034.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK371105	0.0	AK371105.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2125C10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020195842.1	0.0	protein FAR1-RELATED SEQUENCE 9-like
TrEMBL	F2E4N1	0.0	F2E4N1_HORVV; Predicted protein
STRING	MLOC_13034.8	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-99	FAR1-related sequence 5